Literature DB >> 25762326

Torque transmission mechanism via DELSEED loop of F1-ATPase.

Rikiya Watanabe1, Kazuma Koyasu2, Huijuan You2, Mizue Tanigawara2, Hiroyuki Noji3.   

Abstract

F1-ATPase (F1) is an ATP-driven rotary motor in which the three catalytic β subunits in the stator ring sequentially induce the unidirectional rotation of the rotary γ subunit. Many lines of evidence have revealed open-to-closed conformational transitions in the β subunit that swing the C-terminal domain inward. This conformational transition causes a C-terminal protruding loop with conserved sequence DELSEED to push the γ subunit. Previous work, where all residues of DELSEED were substituted with glycine to disrupt the specific interaction with γ and introduce conformational flexibility, showed that F1 still rotated, but that the torque was halved, indicating a remarkable impact on torque transmission. In this study, we conducted a stall-and-release experiment on F1 with a glycine-substituted DELSEED loop to investigate the impact of the glycine substitution on torque transmission upon ATP binding and ATP hydrolysis. The mutant F1 showed a significantly reduced angle-dependent change in ATP affinity, whereas there was no change in the equilibrium for ATP hydrolysis. These findings indicate that the DELSEED loop is predominantly responsible for torque transmission upon ATP binding but not for that upon ATP hydrolysis.
Copyright © 2015 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2015        PMID: 25762326      PMCID: PMC4375457          DOI: 10.1016/j.bpj.2015.01.017

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  55 in total

1.  Coupling of rotation and catalysis in F(1)-ATPase revealed by single-molecule imaging and manipulation.

Authors:  Kengo Adachi; Kazuhiro Oiwa; Takayuki Nishizaka; Shou Furuike; Hiroyuki Noji; Hiroyasu Itoh; Masasuke Yoshida; Kazuhiko Kinosita
Journal:  Cell       Date:  2007-07-27       Impact factor: 41.582

2.  Axle-less F1-ATPase rotates in the correct direction.

Authors:  Shou Furuike; Mohammad Delawar Hossain; Yasushi Maki; Kengo Adachi; Toshiharu Suzuki; Ayako Kohori; Hiroyasu Itoh; Masasuke Yoshida; Kazuhiko Kinosita
Journal:  Science       Date:  2008-02-15       Impact factor: 47.728

3.  F1-ATPase rotates by an asymmetric, sequential mechanism using all three catalytic subunits.

Authors:  Takayuki Ariga; Eiro Muneyuki; Masasuke Yoshida
Journal:  Nat Struct Mol Biol       Date:  2007-08-26       Impact factor: 15.369

4.  Functional halt positions of rotary FOF1-ATPase correlated with crystal structures.

Authors:  Hendrik Sielaff; Henning Rennekamp; Siegfried Engelbrecht; Wolfgang Junge
Journal:  Biophys J       Date:  2008-08-22       Impact factor: 4.033

5.  Cooperative three-step motions in catalytic subunits of F(1)-ATPase correlate with 80 degrees and 40 degrees substep rotations.

Authors:  Tomoko Masaike; Fumie Koyama-Horibe; Kazuhiro Oiwa; Masasuke Yoshida; Takayuki Nishizaka
Journal:  Nat Struct Mol Biol       Date:  2008-11-16       Impact factor: 15.369

Review 6.  The rotary mechanism of the ATP synthase.

Authors:  Robert K Nakamoto; Joanne A Baylis Scanlon; Marwan K Al-Shawi
Journal:  Arch Biochem Biophys       Date:  2008-05-20       Impact factor: 4.013

7.  Chemomechanical coupling of human mitochondrial F1-ATPase motor.

Authors:  Toshiharu Suzuki; Kazumi Tanaka; Chiaki Wakabayashi; Ei-ichiro Saita; Masasuke Yoshida
Journal:  Nat Chem Biol       Date:  2014-09-21       Impact factor: 15.040

8.  Correlation between the conformational states of F1-ATPase as determined from its crystal structure and single-molecule rotation.

Authors:  Daichi Okuno; Ryo Fujisawa; Ryota Iino; Yoko Hirono-Hara; Hiromi Imamura; Hiroyuki Noji
Journal:  Proc Natl Acad Sci U S A       Date:  2008-12-15       Impact factor: 11.205

9.  Novel features of the rotary catalytic mechanism revealed in the structure of yeast F1 ATPase.

Authors:  Venkataraman Kabaleeswaran; Neeti Puri; John E Walker; Andrew G W Leslie; David M Mueller
Journal:  EMBO J       Date:  2006-11-02       Impact factor: 11.598

10.  Temperature-sensitive reaction intermediate of F1-ATPase.

Authors:  Rikiya Watanabe; Ryota Iino; Katsuya Shimabukuro; Masasuke Yoshida; Hiroyuki Noji
Journal:  EMBO Rep       Date:  2007-12-07       Impact factor: 8.807

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  8 in total

1.  Identification of two segments of the γ subunit of ATP synthase responsible for the different affinities of the catalytic nucleotide-binding sites.

Authors:  Nelli Mnatsakanyan; Yunxiang Li; Joachim Weber
Journal:  J Biol Chem       Date:  2018-12-03       Impact factor: 5.157

2.  Essential Role of the ε Subunit for Reversible Chemo-Mechanical Coupling in F1-ATPase.

Authors:  Rikiya Watanabe; Makoto Genda; Yasuyuki Kato-Yamada; Hiroyuki Noji
Journal:  Biophys J       Date:  2018-01-09       Impact factor: 4.033

3.  Interaction between γC87 and γR242 residues participates in energy coupling between catalysis and proton translocation in Escherichia coli ATP synthase.

Authors:  Yunxiang Li; Xinyou Ma; Joachim Weber
Journal:  Biochim Biophys Acta Bioenerg       Date:  2019-06-25       Impact factor: 3.991

4.  Computational Design of Inhibitors Targeting the Catalytic β Subunit of Escherichia coli FOF1-ATP Synthase.

Authors:  Luis Pablo Avila-Barrientos; Luis Fernando Cofas-Vargas; Guillermin Agüero-Chapin; Enrique Hernández-García; Sergio Ruiz-Carmona; Norma A Valdez-Cruz; Mauricio Trujillo-Roldán; Joachim Weber; Yasser B Ruiz-Blanco; Xavier Barril; Enrique García-Hernández
Journal:  Antibiotics (Basel)       Date:  2022-04-22

5.  Structural basis for power stroke vs. Brownian ratchet mechanisms of motor proteins.

Authors:  Wonmuk Hwang; Martin Karplus
Journal:  Proc Natl Acad Sci U S A       Date:  2019-09-10       Impact factor: 11.205

Review 6.  The regulatory subunit ε in Escherichia coli FOF1-ATP synthase.

Authors:  Hendrik Sielaff; Thomas M Duncan; Michael Börsch
Journal:  Biochim Biophys Acta Bioenerg       Date:  2018-06-20       Impact factor: 3.991

7.  ATP hydrolysis assists phosphate release and promotes reaction ordering in F1-ATPase.

Authors:  Chun-Biu Li; Hiroshi Ueno; Rikiya Watanabe; Hiroyuki Noji; Tamiki Komatsuzaki
Journal:  Nat Commun       Date:  2015-12-17       Impact factor: 14.919

8.  Bedaquiline, an FDA-approved drug, inhibits mitochondrial ATP production and metastasis in vivo, by targeting the gamma subunit (ATP5F1C) of the ATP synthase.

Authors:  Marco Fiorillo; Cristian Scatena; Antonio Giuseppe Naccarato; Federica Sotgia; Michael P Lisanti
Journal:  Cell Death Differ       Date:  2021-05-13       Impact factor: 15.828

  8 in total

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