Literature DB >> 32651904

Synthetic biology approaches to dissecting linear motor protein function: towards the design and synthesis of artificial autonomous protein walkers.

Heiner Linke1, Birte Höcker2, Ken'ya Furuta3, Nancy R Forde4, Paul M G Curmi5.   

Abstract

Molecular motors and machines are essential for all cellular processes that together enable life. Built from proteins with a wide range of properties, functionalities and performance characteristics, biological motors perform complex tasks and can transduce chemical energy into mechanical work more efficiently than human-made combustion engines. Sophisticated studies of biological protein motors have provided many structural and biophysical insights and enabled the development of models for motor function. However, from the study of highly evolved, biological motors, it remains difficult to discern detailed mechanisms, for example, about the relative role of different force generation mechanisms, or how information is communicated across a protein to achieve the necessary coordination. A promising, complementary approach to answering these questions is to build synthetic protein motors from the bottom up. Indeed, much effort has been invested in functional protein design, but so far, the "holy grail" of designing and building a functional synthetic protein motor has not been realized. Here, we review the progress made to date, and we put forward a roadmap for achieving the aim of constructing the first artificial, autonomously running protein motor. Specifically, we propose to break down the task into (i) enzymatic control of track binding, (ii) the engineering of asymmetry and (iii) the engineering of allosteric control for internal communication. We also propose specific approaches for solving each of these challenges.

Entities:  

Keywords:  Allostery; Energy transduction; Motor protein; Processivity; Synthetic biology; Thermal fluctuations

Year:  2020        PMID: 32651904      PMCID: PMC7429643          DOI: 10.1007/s12551-020-00717-1

Source DB:  PubMed          Journal:  Biophys Rev        ISSN: 1867-2450


  113 in total

1.  Phosphorylated smooth muscle heavy meromyosin shows an open conformation linked to activation.

Authors:  Bruce A J Baumann; Dianne W Taylor; Zhong Huang; Florence Tama; Patricia M Fagnant; Kathleen M Trybus; Kenneth A Taylor
Journal:  J Mol Biol       Date:  2011-11-04       Impact factor: 5.469

2.  World's tiniest machines win chemistry Nobel.

Authors:  Richard Van Noorden; Davide Castelvecchi
Journal:  Nature       Date:  2016-10-13       Impact factor: 49.962

Review 3.  MinD and role of the deviant Walker A motif, dimerization and membrane binding in oscillation.

Authors:  Joe Lutkenhaus; M Sundaramoorthy
Journal:  Mol Microbiol       Date:  2003-04       Impact factor: 3.501

Review 4.  The coming of age of de novo protein design.

Authors:  Po-Ssu Huang; Scott E Boyken; David Baker
Journal:  Nature       Date:  2016-09-15       Impact factor: 49.962

Review 5.  The Archaellum: An Update on the Unique Archaeal Motility Structure.

Authors:  Sonja-Verena Albers; Ken F Jarrell
Journal:  Trends Microbiol       Date:  2018-02-13       Impact factor: 17.079

6.  A synthetic DNA motor that transports nanoparticles along carbon nanotubes.

Authors:  Tae-Gon Cha; Jing Pan; Haorong Chen; Janette Salgado; Xiang Li; Chengde Mao; Jong Hyun Choi
Journal:  Nat Nanotechnol       Date:  2013-12-08       Impact factor: 39.213

7.  Three-dimensional structure of myosin subfragment-1: a molecular motor.

Authors:  I Rayment; W R Rypniewski; K Schmidt-Bäse; R Smith; D R Tomchick; M M Benning; D A Winkelmann; G Wesenberg; H M Holden
Journal:  Science       Date:  1993-07-02       Impact factor: 47.728

8.  Crystal structure of the kinesin motor domain reveals a structural similarity to myosin.

Authors:  F J Kull; E P Sablin; R Lau; R J Fletterick; R D Vale
Journal:  Nature       Date:  1996-04-11       Impact factor: 49.962

9.  Structural basis of cooperativity in kinesin revealed by 3D reconstruction of a two-head-bound state on microtubules.

Authors:  Daifei Liu; Xueqi Liu; Zhiguo Shang; Charles V Sindelar
Journal:  Elife       Date:  2017-05-15       Impact factor: 8.140

10.  Engineering myosins for long-range transport on actin filaments.

Authors:  Tony D Schindler; Lu Chen; Paul Lebel; Muneaki Nakamura; Zev Bryant
Journal:  Nat Nanotechnol       Date:  2013-11-17       Impact factor: 39.213

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  4 in total

1.  Synergistic regulation of nonbinary molecular switches by protonation and light.

Authors:  Xin Zhang; Yu-Dong Yang; Zhi-Hao Lu; Li-Jin Xu; Jonathan L Sessler; Han-Yuan Gong
Journal:  Proc Natl Acad Sci U S A       Date:  2021-11-23       Impact factor: 11.205

Review 2.  Self-Concern Across Scales: A Biologically Inspired Direction for Embodied Artificial Intelligence.

Authors:  Matthew Sims
Journal:  Front Neurorobot       Date:  2022-04-25       Impact factor: 3.493

3.  Simulations of Phage T7 Capsid Expansion Reveal the Role of Molecular Sterics on Dynamics.

Authors:  Paul C Whitford; Wen Jiang; Philip Serwer
Journal:  Viruses       Date:  2020-11-07       Impact factor: 5.048

Review 4.  Through the Eyes of Creators: Observing Artificial Molecular Motors.

Authors:  Ivan N Unksov; Chapin S Korosec; Pradheebha Surendiran; Damiano Verardo; Roman Lyttleton; Nancy R Forde; Heiner Linke
Journal:  ACS Nanosci Au       Date:  2022-01-13
  4 in total

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