| Literature DB >> 31405192 |
Claudio Luchini1, Nicola Veronese2, Alessia Nottegar3, Vera Cappelletti4, Maria G Daidone4, Lee Smith5, Christopher Parris5, Lodewijk A A Brosens1,6,7, Maria G Caruso2, Liang Cheng8, Christopher L Wolfgang9, Laura D Wood10,11, Michele Milella12, Roberto Salvia13, Aldo Scarpa14,15.
Abstract
Liquid biopsy (LB) is a non-invasive approach representing a promising tool for new precision medicine strategies for cancer treatment. However, a comprehensive analysis of its reliability for pancreatic cancer (PC) is lacking. To this aim, we performed the first meta-analysis on this topic. We calculated the pooled sensitivity, specificity, positive (LR+) and negative (LR-) likelihood ratio, and diagnostic odds ratio (DOR). A summary receiver operating characteristic curve (SROC) and area under curve (AUC) were used to evaluate the overall accuracy. We finally assessed the concordance rate of all mutations detected by multi-genes panels. Fourteen eligible studies involving 369 patients were included. The overall pooled sensitivity and specificity were 0.70 and 0.86, respectively. The LR+ was 3.85, the LR- was 0.34 and DOR was 15.84. The SROC curve with an AUC of 0.88 indicated a relatively high accuracy of LB for molecular characterization of PC. The concordance rate of all mutations detected by multi-genes panels was 31.9%. LB can serve as surrogate for tissue in the molecular profiling of PC, because of its relatively high sensitivity, specificity and accuracy. It represents a unique opportunity to be further explored towards its introduction in clinical practice and for developing new precision medicine approaches against PC.Entities:
Keywords: cfDNA; circulating tumor cells (CTC); liquid biopsy; pancreatic cancer; precision medicine
Year: 2019 PMID: 31405192 PMCID: PMC6721631 DOI: 10.3390/cancers11081152
Source DB: PubMed Journal: Cancers (Basel) ISSN: 2072-6694 Impact factor: 6.639
Summarizing table of the most relevant features of the studies included in this meta-analysis.
| First Author of the Study, Year [ | N. of Patients | Stage | Type of Tissue Specimen | Molecular Test for Tissue Specimen and Genes | Time Point of Tissue and Liquid Biopsy Test and Genes | Type of Liquid Biopsy | Molecular Test for Liquid Biopsy | TP | FP | TN | FN |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Ako, 2017 [ | 40 | I–II: 60%, III–IV: 40% | 16 SR and 24 EUS-FNA | PCR, KRAS | The same time | Plasma and serum, cfDNA | Droplet PCR, KRAS | 19 | 0 | 3 | 18 |
| Bernard, 2019a [ | 34 | I–II: 68%, III–IV: 32% | 22 SR and 12 EUS-FNA | PCR, KRAS | The same time | Blood for cfDNA | Droplet digital PCR, KRAS | 20 | 1 | 11 | 2 |
| Brychta, 2016 [ | 50 | I–II: 82%, III–IV: 18% | SR | Chip-based digital PCR, KRAS | The same time | Plasma (cfDNA) | Chip-based digital PCR, KRAS | 13 | 0 | 14 | 23 |
| Earl, 2015 [ | 12 | NA | SR | PCR, KRAS | The same time | Plasma (cfDNA) | Droplet digital PCR, KRAS | 3 | 3 | 2 | 4 |
| Kinugasa, 2015 [ | 75 | I–II: 3%, III–IV: 97% | EUS-FNA | PCR, KRAS | The same time | Serum (cfDNA) | Droplet digital PCR, KRAS | 43 | 4 | 15 | 13 |
| Kulemann, 2016 [ | 11 | I–II: 91%, III–IV: 9% | NS | PCR, KRAS | Retrospective | Blood with isolation and analysis of CTCs | PCR, KRAS | 5 | 0 | 0 | 6 |
| Marchese, 2006 [ | 30 | I–II: 83%,III–IV: 17% | 25 SR, 5 EUS-FNA | rflp-PCR KRAS | The same time | Serum (cfDNA) | rflp-PCR KRAS | 0 | 0 | 9 | 21 |
| Park, 2018a [ | 17 | I–II: 18%,III–IV: 82% | EUS-FNA | PCR, KRAS | The same time | Plasma (cfDNA) | PCR, KRAS | 10 | 0 | 4 | 3 |
| Pishvaian, 2017a,* [ | 16 | I–II: 0%,III–IV: 100% | EUS-FNA of pancreas or metastasis | 321 genes panel NGS | During treatment | cfDNA | 68 genes panel NGS | 6 | 1 | 0 | 9 |
| Sefrioui, 2017 [ | 27 | NS | EUS-FNA/biopsy/SR | Digital PCR, KRAS | The same time | Plasma (cfDNA) | Digital PCR, KRAS | 14 | 3 | 5 | 5 |
| Shibata, 1998 [ | 3 | I–II: 66.6%, III–IV: 33.3% | NS | nPCR, KRAS | The same time | Peripheral blood (CTCs separation) | nPCR, KRAS | 3 | 0 | 0 | 0 |
| Vietsch, 2018a,* [ | 5 | I–II: 100%, III–IV: 0% | SR | 56 genes panel NGS | LB before surgery | cfDNA | 56 genes panel NGS | 0 | 0 | 0 | 5 |
| Wu, 2014 [ | 36 | NS | NS | COLD-PCR, KRAS | The same time | Plasma (cfDNA) | COLD-PCR, KRAS | 26 | 0 | 10 | 0 |
| Zill, 2015 [ | 13 | NS | EUS-FNA | NGS | The same time | Plasma (cfDNA) | 54 genes panel NGS | 12 | 0 | 0 | 1 |
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Abbreviation: TP: true positive, FP: false positive, TN: true negative, FN: false negative; SR: surgical resected specimen; EUS-FNA: endoscopic ultrasound-guided fine-needle aspiration; cfDNA: circulating-free DNA; CTCs: circulating tumor cells; NS: not specified; rflp-PCR: restriction fragment length polymorphism-polymerase chain reaction; NGS: targeted next-generation sequencing for specific pancreatic cancer genes; nPCR: nested PCR; LB: liquid biopsy; COLD-PCR: co-amplification-at-lower-denaturation-temperature polymerase chain reaction; Note: Bernard, 2019a refers to the analysis of exoDNA in liquid biopsy; Park, 2018a refers to the analysis using PCR; Pishvaian, 2017a refers to a cohort of patients in which cfDNA has been analyzed; Vietsch, 2018a refers to patients whose liquid biopsy has been analyzed before surgical resection of pancreatic tumor; * in these studies, the rate of concordance of mutations between tumor tissue and liquid biopsy has been shown taking into account the four most important genes in pancreatic cancer (KRAS, TP53, SMAD4, and CDKN2A).
Figure 1This figure represents the core of this meta-analysis, in which we tested the reliability of liquid biopsy to serve as surrogate for tissue for molecular profiling of pancreatic cancer. The upper panel is a schematic representation of the differences between the materials used for liquid biopsy (above all from the blood, on the left) and for tissue specimen analysis (surgical resections or cytology, on the right). The section indicated with letter A shows the overall summary of diagnostic accuracy parameters for liquid biopsy compared to tissue specimen with this meta-analysis, whereas the section with letter B shows the same parameters, but obtained analyzing data regarding KRAS only. Abbreviations: CI: confidence interval; DOR: diagnostic odds ratio; LR+: positive likelihood ratio, LR−: negative likelihood ratio.
Figure 2(A) shows the sensitivity and specificity meta-analysis plot for the appropriateness of liquid biopsy compared to tissue specimen, whereas (B) shows the same plot, but obtained analyzing data regarding KRAS mutational status only. (C) is a Venn diagram showing, for studies based on next-generation sequencing, the concordance rate of all mutations detected by the analysis on tissue specimens and by the analysis on liquid biopsy. The area on the left (green area) indicates mutations detected only in tissue samples, the area on the right (red area) indicates mutations detected only in liquid biopsy, whereas the middle area indicates mutations detected in both tissue samples and liquid biopsy.
Figure 3Summary Receiver Operating Curve (SROC) of the appropriateness liquid biopsy, taking tissue specimen as the outcome. In this figure, the blue lines represent the AUC (central line) with its 95% CI (external lines) calculated with a meta-analytic approach, while red dots represent the sensitivity and specificity data for each study.
Figure 4Summary Receiver Operating Curve (SROC) of the appropriateness liquid biopsy, taking KRAS mutational status as the outcome. In this figure, the blue lines represent the AUC (central line) with its 95% CI (external lines) calculated with a meta-analytic approach, while red dots represent the sensitivity and specificity data for each study.