Literature DB >> 28874546

Combined circulating tumor DNA and protein biomarker-based liquid biopsy for the earlier detection of pancreatic cancers.

Joshua D Cohen1,2,3,4,5, Ammar A Javed6, Christopher Thoburn3, Fay Wong1,2,3,4, Jeanne Tie7,8,9, Peter Gibbs7,8,9, C Max Schmidt10,11, Michele T Yip-Schneider10, Peter J Allen12, Mark Schattner13, Randall E Brand14, Aatur D Singhi15, Gloria M Petersen16, Seung-Mo Hong17, Song Cheol Kim18, Massimo Falconi19, Claudio Doglioni20, Matthew J Weiss6, Nita Ahuja6, Jin He6, Martin A Makary6, Anirban Maitra21, Samir M Hanash21, Marco Dal Molin4, Yuxuan Wang1,2,3,4, Lu Li22, Janine Ptak1,2,3,4, Lisa Dobbyn1,2,3,4, Joy Schaefer1,2,3,4, Natalie Silliman1,2,3,4, Maria Popoli1,2,3,4, Michael G Goggins3,4,23,24, Ralph H Hruban3,4,24, Christopher L Wolfgang6, Alison P Klein3,4,25, Cristian Tomasetti3,22,26, Nickolas Papadopoulos1,3,4, Kenneth W Kinzler1,3,4, Bert Vogelstein27,2,3,4, Anne Marie Lennon28,23.   

Abstract

The earlier diagnosis of cancer is one of the keys to reducing cancer deaths in the future. Here we describe our efforts to develop a noninvasive blood test for the detection of pancreatic ductal adenocarcinoma. We combined blood tests for KRAS gene mutations with carefully thresholded protein biomarkers to determine whether the combination of these markers was superior to any single marker. The cohort tested included 221 patients with resectable pancreatic ductal adenocarcinomas and 182 control patients without known cancer. KRAS mutations were detected in the plasma of 66 patients (30%), and every mutation found in the plasma was identical to that subsequently found in the patient's primary tumor (100% concordance). The use of KRAS in conjunction with four thresholded protein biomarkers increased the sensitivity to 64%. Only one of the 182 plasma samples from the control cohort was positive for any of the DNA or protein biomarkers (99.5% specificity). This combinatorial approach may prove useful for the earlier detection of many cancer types.

Entities:  

Keywords:  circulating tumor DNA; early cancer detection; liquid biopsy; pancreatic cancer; protein biomarkers

Mesh:

Substances:

Year:  2017        PMID: 28874546      PMCID: PMC5617273          DOI: 10.1073/pnas.1704961114

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  59 in total

Review 1.  The regulation and role of osteopontin in malignant transformation and cancer.

Authors:  Mohamed K El-Tanani; Frederick Charles Campbell; Vittal Kurisetty; Dachuan Jin; Mella McCann; Philip S Rudland
Journal:  Cytokine Growth Factor Rev       Date:  2006-11-17       Impact factor: 7.638

2.  Proteomics. Tissue-based map of the human proteome.

Authors:  Mathias Uhlén; Linn Fagerberg; Björn M Hallström; Cecilia Lindskog; Per Oksvold; Adil Mardinoglu; Åsa Sivertsson; Caroline Kampf; Evelina Sjöstedt; Anna Asplund; IngMarie Olsson; Karolina Edlund; Emma Lundberg; Sanjay Navani; Cristina Al-Khalili Szigyarto; Jacob Odeberg; Dijana Djureinovic; Jenny Ottosson Takanen; Sophia Hober; Tove Alm; Per-Henrik Edqvist; Holger Berling; Hanna Tegel; Jan Mulder; Johan Rockberg; Peter Nilsson; Jochen M Schwenk; Marica Hamsten; Kalle von Feilitzen; Mattias Forsberg; Lukas Persson; Fredric Johansson; Martin Zwahlen; Gunnar von Heijne; Jens Nielsen; Fredrik Pontén
Journal:  Science       Date:  2015-01-23       Impact factor: 47.728

3.  Morphologic abnormalities are poorly predictive of visceral pain in chronic pancreatitis.

Authors:  Rubin Bahuva; R Matthew Walsh; Leonardo Kapural; Tyler Stevens
Journal:  Pancreas       Date:  2013-01       Impact factor: 3.327

4.  Detection of circulating tumor DNA in early- and late-stage human malignancies.

Authors:  Chetan Bettegowda; Mark Sausen; Rebecca J Leary; Isaac Kinde; Yuxuan Wang; Nishant Agrawal; Bjarne R Bartlett; Hao Wang; Brandon Luber; Rhoda M Alani; Emmanuel S Antonarakis; Nilofer S Azad; Alberto Bardelli; Henry Brem; John L Cameron; Clarence C Lee; Leslie A Fecher; Gary L Gallia; Peter Gibbs; Dung Le; Robert L Giuntoli; Michael Goggins; Michael D Hogarty; Matthias Holdhoff; Seung-Mo Hong; Yuchen Jiao; Hartmut H Juhl; Jenny J Kim; Giulia Siravegna; Daniel A Laheru; Calogero Lauricella; Michael Lim; Evan J Lipson; Suely Kazue Nagahashi Marie; George J Netto; Kelly S Oliner; Alessandro Olivi; Louise Olsson; Gregory J Riggins; Andrea Sartore-Bianchi; Kerstin Schmidt; le-Ming Shih; Sueli Mieko Oba-Shinjo; Salvatore Siena; Dan Theodorescu; Jeanne Tie; Timothy T Harkins; Silvio Veronese; Tian-Li Wang; Jon D Weingart; Christopher L Wolfgang; Laura D Wood; Dongmei Xing; Ralph H Hruban; Jian Wu; Peter J Allen; C Max Schmidt; Michael A Choti; Victor E Velculescu; Kenneth W Kinzler; Bert Vogelstein; Nickolas Papadopoulos; Luis A Diaz
Journal:  Sci Transl Med       Date:  2014-02-19       Impact factor: 17.956

5.  A combination of molecular markers and clinical features improve the classification of pancreatic cysts.

Authors:  Simeon Springer; Yuxuan Wang; Marco Dal Molin; David L Masica; Yuchen Jiao; Isaac Kinde; Amanda Blackford; Siva P Raman; Christopher L Wolfgang; Tyler Tomita; Noushin Niknafs; Christopher Douville; Janine Ptak; Lisa Dobbyn; Peter J Allen; David S Klimstra; Mark A Schattner; C Max Schmidt; Michele Yip-Schneider; Oscar W Cummings; Randall E Brand; Herbert J Zeh; Aatur D Singhi; Aldo Scarpa; Roberto Salvia; Giuseppe Malleo; Giuseppe Zamboni; Massimo Falconi; Jin-Young Jang; Sun-Whe Kim; Wooil Kwon; Seung-Mo Hong; Ki-Byung Song; Song Cheol Kim; Niall Swan; Jean Murphy; Justin Geoghegan; William Brugge; Carlos Fernandez-Del Castillo; Mari Mino-Kenudson; Richard Schulick; Barish H Edil; Volkan Adsay; Jorge Paulino; Jeanin van Hooft; Shinichi Yachida; Satoshi Nara; Nobuyoshi Hiraoka; Kenji Yamao; Susuma Hijioka; Schalk van der Merwe; Michael Goggins; Marcia Irene Canto; Nita Ahuja; Kenzo Hirose; Martin Makary; Matthew J Weiss; John Cameron; Meredith Pittman; James R Eshleman; Luis A Diaz; Nickolas Papadopoulos; Kenneth W Kinzler; Rachel Karchin; Ralph H Hruban; Bert Vogelstein; Anne Marie Lennon
Journal:  Gastroenterology       Date:  2015-08-04       Impact factor: 22.682

6.  Clinical usefulness of carbohydrate antigen 19-9 as a screening test for pancreatic cancer in an asymptomatic population.

Authors:  Jee-Eun Kim; Kyu Taek Lee; Jong Kyun Lee; Seung Woon Paik; Jong Chul Rhee; Kyoo Wan Choi
Journal:  J Gastroenterol Hepatol       Date:  2004-02       Impact factor: 4.029

7.  Evaluation of DNA from the Papanicolaou test to detect ovarian and endometrial cancers.

Authors:  Isaac Kinde; Chetan Bettegowda; Yuxuan Wang; Jian Wu; Nishant Agrawal; Ie-Ming Shih; Robert Kurman; Fanny Dao; Douglas A Levine; Robert Giuntoli; Richard Roden; James R Eshleman; Jesus Paula Carvalho; Suely Kazue Nagahashi Marie; Nickolas Papadopoulos; Kenneth W Kinzler; Bert Vogelstein; Luis A Diaz
Journal:  Sci Transl Med       Date:  2013-01-09       Impact factor: 17.956

8.  Combining markers with and without the limit of detection.

Authors:  Ting Dong; Catherine Chunling Liu; Emanuel F Petricoin; Liansheng Larry Tang
Journal:  Stat Med       Date:  2013-10-17       Impact factor: 2.373

9.  Detection of somatic mutations and HPV in the saliva and plasma of patients with head and neck squamous cell carcinomas.

Authors:  Yuxuan Wang; Simeon Springer; Carolyn L Mulvey; Natalie Silliman; Joy Schaefer; Mark Sausen; Nathan James; Eleni M Rettig; Theresa Guo; Curtis R Pickering; Justin A Bishop; Christine H Chung; Joseph A Califano; David W Eisele; Carole Fakhry; Christine G Gourin; Patrick K Ha; Hyunseok Kang; Ana Kiess; Wayne M Koch; Jeffrey N Myers; Harry Quon; Jeremy D Richmon; David Sidransky; Ralph P Tufano; William H Westra; Chetan Bettegowda; Luis A Diaz; Nickolas Papadopoulos; Kenneth W Kinzler; Bert Vogelstein; Nishant Agrawal
Journal:  Sci Transl Med       Date:  2015-06-24       Impact factor: 17.956

10.  Evaluation of serum CEA, CYFRA21-1 and CA125 for the early detection of colorectal cancer using longitudinal preclinical samples.

Authors:  D S Thomas; E-O Fourkala; S Apostolidou; R Gunu; A Ryan; I Jacobs; U Menon; W Alderton; A Gentry-Maharaj; J F Timms
Journal:  Br J Cancer       Date:  2015-06-02       Impact factor: 7.640

View more
  151 in total

1.  Genetic and Circulating Biomarker Data Improve Risk Prediction for Pancreatic Cancer in the General Population.

Authors:  Brian M Wolpin; Peter Kraft; Jihye Kim; Chen Yuan; Ana Babic; Ying Bao; Clary B Clish; Michael N Pollak; Laufey T Amundadottir; Alison P Klein; Rachael Z Stolzenberg-Solomon; Pari V Pandharipande; Lauren K Brais; Marisa W Welch; Kimmie Ng; Edward L Giovannucci; Howard D Sesso; JoAnn E Manson; Meir J Stampfer; Charles S Fuchs
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2020-04-22       Impact factor: 4.254

2.  Early detection and imaging strategies to reveal and target developing pancreatic cancer.

Authors:  Howard C Crawford; Michael B Wallace; Peter Storz
Journal:  Expert Rev Anticancer Ther       Date:  2020-01-27       Impact factor: 4.512

3.  Flavin Binding Allosteric Aptamer with Noncovalent Labeling for miR Sensing.

Authors:  A Gee; J A Grennell; S Sitaula; J Jayawickramarajah; M F Ali
Journal:  Bioconjug Chem       Date:  2019-10-09       Impact factor: 4.774

4.  RNA sequencing and swarm intelligence-enhanced classification algorithm development for blood-based disease diagnostics using spliced blood platelet RNA.

Authors:  Myron G Best; Sjors G J G In 't Veld; Nik Sol; Thomas Wurdinger
Journal:  Nat Protoc       Date:  2019-03-20       Impact factor: 13.491

Review 5.  Developing a Roadmap for Interventional Oncology.

Authors:  Stefan O Schoenberg; Ulrike I Attenberger; Stephen B Solomon; Ralph Weissleder
Journal:  Oncologist       Date:  2018-06-29

6.  Validation Strategy for Ultrasensitive Mutation Detection.

Authors:  Marija Debeljak; Michael Noë; Stacy L Riel; Lisa M Haley; Alexis L Norris; Derek A Anderson; Emily M Adams; Masaya Suenaga; Katie F Beierl; Ming-Tseh Lin; Michael G Goggins; Christopher D Gocke; James R Eshleman
Journal:  Mol Diagn Ther       Date:  2018-10       Impact factor: 4.074

Review 7.  Detection of Solid Tumor Molecular Residual Disease (MRD) Using Circulating Tumor DNA (ctDNA).

Authors:  Re-I Chin; Kevin Chen; Abul Usmani; Chanelle Chua; Peter K Harris; Michael S Binkley; Tej D Azad; Jonathan C Dudley; Aadel A Chaudhuri
Journal:  Mol Diagn Ther       Date:  2019-06       Impact factor: 4.074

Review 8.  Liquid biopsies in pancreatic cancer.

Authors:  Nabiollah Kamyabi; Vincent Bernard; Anirban Maitra
Journal:  Expert Rev Anticancer Ther       Date:  2019-09-26       Impact factor: 4.512

Review 9.  Molecular mechanisms of the preventable causes of cancer in the United States.

Authors:  Erica A Golemis; Paul Scheet; Tim N Beck; Eward M Scolnick; David J Hunter; Ernest Hawk; Nancy Hopkins
Journal:  Genes Dev       Date:  2018-06-26       Impact factor: 11.361

10.  A Multianalyte Panel Consisting of Extracellular Vesicle miRNAs and mRNAs, cfDNA, and CA19-9 Shows Utility for Diagnosis and Staging of Pancreatic Ductal Adenocarcinoma.

Authors:  Zijian Yang; Michael J LaRiviere; Jina Ko; Jacob E Till; Theresa Christensen; Stephanie S Yee; Taylor A Black; Kyle Tien; Andrew Lin; Hanfei Shen; Neha Bhagwat; Daniel Herman; Andrew Adallah; Mark H O'Hara; Charles M Vollmer; Bryson W Katona; Ben Z Stanger; David Issadore; Erica L Carpenter
Journal:  Clin Cancer Res       Date:  2020-04-16       Impact factor: 12.531

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.