| Literature DB >> 31388558 |
Emrah Düzel1,2,3,4, Julio Acosta-Cabronero2,5, David Berron2,6, Geert Jan Biessels7, Isabella Björkman-Burtscher6,8, Michel Bottlaender9, Richard Bowtell10, Mark V Buchem11, Arturo Cardenas-Blanco1,2, Fawzi Boumezbeur9, Dennis Chan12, Stuart Clare13, Mauro Costagli14,15, Ludovic de Rochefort16, Ariane Fillmer17, Penny Gowland10, Oskar Hansson6,18, Jeroen Hendrikse7, Oliver Kraff19, Mark E Ladd20,21, Itamar Ronen11, Esben Petersen22, James B Rowe12, Hartwig Siebner22,23, Tony Stoecker24, Sina Straub20, Michela Tosetti14,15, Kamil Uludag25,26, Alexandre Vignaud9, Jaco Zwanenburg7, Oliver Speck2,4,27,28.
Abstract
INTRODUCTION: The goal of European Ultrahigh-Field Imaging Network in Neurodegenerative Diseases (EUFIND) is to identify opportunities and challenges of 7 Tesla (7T) MRI for clinical and research applications in neurodegeneration. EUFIND comprises 22 European and one US site, including over 50 MRI and dementia experts as well as neuroscientists.Entities:
Keywords: Alzheimer's disease (AD); Magnetic resonance imaging (MRI); Mild cognitive impairment (MCI); Parkinson's disease (PD); Subjective cognitive decline (SCD); Ultrahigh-field MRI; Vascular dementia
Year: 2019 PMID: 31388558 PMCID: PMC6675944 DOI: 10.1016/j.dadm.2019.04.010
Source DB: PubMed Journal: Alzheimers Dement (Amst) ISSN: 2352-8729
Fig. 1(A) Structure of EUFIND. (B) Timeline of EUFIND working group meetings and milestones. Abbreviations: EUFIND, European Ultrahigh-Field Imaging Network in Neurodegenerative Diseases.
Sequence parameters of the high-resolution anatomical imaging protocol
| 3D-MPRAGE | 2D-TSE | |||||
|---|---|---|---|---|---|---|
| Siemens | GE | Philips | Siemens | GE | Philips | |
| Spatial resolution mm | 0.65 iso | 0.7 iso | 0.65 iso | 0.4 × 0.4 × 1.0 | 0.4 × 0.4 × 1.1 | 0.44 × 0.45 × 1.0 |
| Nr. of slices | 256 | 240 | 256 | 55 | 28 × 2 | 55 |
| Repetition time ms | 2500 | 2500 | 2500 | 8020 | 15,000 | 8000 |
| Echo time ms | 2.92 | 3 | 3.1 | 76 | 75 | 121 |
| Magn. preparation | Non-sel IR | Non-sel IR | Non-sel IR | No | No | No |
| TI | 1100 ms | 600 ms | 1100 ms | N.A. | N.A. | N.A. |
| Flip angle | 7 deg | 7 deg | 8 deg | n/a | n/a | n/a |
| Acceleration factor | GRAPPA 2 | ASSEST 2 | SENSE 1.6 (AP) | None | 2 | None |
| Acquisition time min | 8:14 | 6:29 | 8:12 | 7:13 | 6:30 × 2 | 8:48 |
Abbreviations: GE, General Electric; GRAPPA, generalized autocalibrated partially parallel acquisition; 3D-MPRAGE, 3-dimensional magnetization prepared rapid acquisition with gradient echo; 2D-TSE, 2-dimensional turbo spin echo.
Fig. 2Sample T1-weighted scans and Freesurfer segmentation across sites. (A) Sample T1-weighted scans from two different sites (top: Pisa [GE], bottom: Bonn [Siemens]). Left: original data; right: after bias-field correction. (B) Sample Freesurfer segmentation results from four sites (top left: Bonn, top right: Essen, bottom left: Magdeburg, bottom right: Paris).
Fig. 3Sample T2-weighted coronal MRI scans through the body of the hippocampus and adjacent medial temporal lobe structures, immediately posterior to the hippocampal head (uncal apex). Scans acquired from Leipzig (left), Magdeburg (center), and Paris (right). Color legend of segmented regions: Brodmann area 36—dark blue, area 35—turquoise, entorhinal cortex—brown, subiculum—mauve, CA1—red, CA2—green, CA3—yellow, dentate gyrus—blue. The segmentation is based on a new protocol by Berron et al. [4].
Sequence parameters of the resting-state fMRI protocol
| Resting-state fMRI | |||
|---|---|---|---|
| Siemens | GE | Philips | |
| Spatial resolution mm | 1.1 iso | 1.1 iso | 1.1 iso |
| Nr. of slices | 40 | 40 | 40 |
| Nr. of volumes | 250 | 240 | 200 + 4 dummies |
| Repetition time ms | 2400 | 3000 | 3000 |
| Echo time ms | 22 | 22.5 | 22 |
| Partial Fourier | 6/8 | Off | Off |
| Acceleration factor | GRAPPA 4 | ASSET 3 | GRAPPA 4 |
| References lines | 64 | 64 | 64 |
| Acquisition time min | 10:27 | 12:12 | 10:12 |
Abbreviations: GE, General Electric; GRAPPA, generalized autocalibrated partially parallel acquisition.
Fig. 4Overview of subjects' mean EPI from different sites.
Fig. 5Average functional correlation coefficient maps. Each seed region is color-coded (left hemisphere perirhinal cortex and parahippocampal region: red and blue, respectively, and green and yellow for the right hemisphere, respectively).
Sequence parameters for QSM
| QSM | |||
|---|---|---|---|
| Siemens | GE | Philips | |
| Spatial resolution mm | 0.3 × 0.3 × 1.25 | 0.4 × 0.4 × 1.2 | 0.35 × .035 × 1.25 |
| Nr. of slices | 120 | 136 | 120 |
| Repetition time ms | 18 | 18.5 | 18 |
| Echo time ms | 10 | 10 | 10 |
| Phase—Partial Fourier | 7/8 | OFF | OFF |
| Slice—Partial Fourier | 7/8 | OFF | OFF |
| Acceleration factor | GRAPPA 2 | ASSET 2 | SENSE 2.1 |
| Acquisition time min | 8:46 | 9:08 | 7:50 |
Abbreviations: GE, General Electric; GRAPPA, generalized autocalibrated partially parallel acquisition; QSM, quantitative susceptibility mapping.
Fig. 6Axial cuts through the corpus striatum illustrating visually tractable QSM-age dependencies. QSM from all scanner vendors were included. The QSM windowing range was (−0.1, 0.1) in parts per million [M: Male, F: Female]. Abbreviation: QSM, quantitative susceptibility mapping.
Fig. 7Left: average and standard deviations of metabolite concentrations acquired at the three 7T MR scanners; right: scatter plot of all individual data (8 subjects) presented as ratios to total creatine.
The EUFIND multisite protocol
| Resolution (mm3) | Acquisition time (min:sec) | |
|---|---|---|
| T1 MPRAGE | 0.65 isotropic | 8:14 |
| 2D phase-contrast | .3 × .3 × 2 | ∼5:00 |
| Resting-state fMRI - inverted phase encoding | 1.1 isotropic | 0:24 |
| Resting-state fMRI | 1.1 isotropic | 10:27 |
| Quantitative susceptibility mapping | .35 × .35 × 1.25 | 8:46 |
| T2 TSE hippocampal angulated | .4 × .4 × 1 | 7:47 |
Abbreviation: MPRAGE, magnetization prepared rapid acquisition with gradient echo.