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Literature DB >> 3138422

The Alu family developed through successive waves of fixation closely connected with primate lineage history.

Abstract

A new method of analyzing phylogenetic relations among members of the sequence family is presented and applied to human Alu sequences upon which work has been published. This method, based upon a correspondence analysis, works with large samples and yields easily interpretable graphical representations. Results obtained argue in favor of a new evolutionary scheme for Alu sequences, implying successive waves of amplification/fixation closely connected to primate lineage history.

Entities: Species

Mesh：

Year: 1988 PMID： 3138422 DOI： 10.1007/bf02100074

Source DB: PubMed Journal: J Mol Evol ISSN： 0022-2844 Impact factor: 2.395

28 in total

1. Insertion of an Alu SINE in the human homologue of the Mlvi-2 locus.

Authors: A Economou-Pachnis; P N Tsichlis
Journal: Nucleic Acids Res Date: 1985-12-09 Impact factor: 16.971

2. Integration site preferences of the Alu family and similar repetitive DNA sequences.

Authors: G R Daniels; P L Deininger
Journal: Nucleic Acids Res Date: 1985-12-20 Impact factor: 16.971

3. Repeated sequences in DNA. Hundreds of thousands of copies of DNA sequences have been incorporated into the genomes of higher organisms.

Authors: R J Britten; D E Kohne
Journal: Science Date: 1968-08-09 Impact factor: 47.728

4. Existence of at least three distinct Alu subfamilies.

Authors: C Willard; H T Nguyen; C W Schmid
Journal: J Mol Evol Date: 1987 Impact factor: 2.395

5. Clustering and subfamily relationships of the Alu family in the human genome.

Authors: V Slagel; E Flemington; V Traina-Dorge; H Bradshaw; P Deininger
Journal: Mol Biol Evol Date: 1987-01 Impact factor: 16.240

6. ACNUC: a nucleic acid sequence data base and analysis system.

Authors: M Gouy; F Milleret; C Mugnier; M Jacobzone; C Gautier
Journal: Nucleic Acids Res Date: 1984-01-11 Impact factor: 16.971

7. DNA methylation and the frequency of CpG in animal DNA.

Authors: A P Bird
Journal: Nucleic Acids Res Date: 1980-04-11 Impact factor: 16.971

8. Species-specific homogeneity of the primate Alu family of repeated DNA sequences.

Authors: G R Daniels; G M Fox; D Loewensteiner; C W Schmid; P L Deininger
Journal: Nucleic Acids Res Date: 1983-11-11 Impact factor: 16.971

9. Human 7SL RNA consists of a 140 nucleotide middle-repetitive sequence inserted in an alu sequence.

Authors: E Ullu; S Murphy; M Melli
Journal: Cell Date: 1982-05 Impact factor: 41.582

10. Alu sequences are processed 7SL RNA genes.

Authors: E Ullu; C Tschudi
Journal: Nature Date: 1984 Nov 8-14 Impact factor: 49.962

58 in total

1. Determinants of CpG islands: expression in early embryo and isochore structure.

Authors: L Ponger; L Duret; D Mouchiroud
Journal: Genome Res Date: 2001-11 Impact factor: 9.043

2. Use and misuse of correspondence analysis in codon usage studies.

Authors: Guy Perrière; Jean Thioulouse
Journal: Nucleic Acids Res Date: 2002-10-15 Impact factor: 16.971

3. Origin of the Alu family: a family of Alu-like monomers gave birth to the left and the right arms of the Alu elements.

Authors: Y Quentin
Journal: Nucleic Acids Res Date: 1992-07-11 Impact factor: 16.971

The Alu family developed through successive waves of fixation closely connected with primate lineage history.

1. Insertion of an Alu SINE in the human homologue of the Mlvi-2 locus.

2. Integration site preferences of the Alu family and similar repetitive DNA sequences.

3. Repeated sequences in DNA. Hundreds of thousands of copies of DNA sequences have been incorporated into the genomes of higher organisms.

4. Existence of at least three distinct Alu subfamilies.

5. Clustering and subfamily relationships of the Alu family in the human genome.

6. ACNUC: a nucleic acid sequence data base and analysis system.

7. DNA methylation and the frequency of CpG in animal DNA.

8. Species-specific homogeneity of the primate Alu family of repeated DNA sequences.

9. Human 7SL RNA consists of a 140 nucleotide middle-repetitive sequence inserted in an alu sequence.

10. Alu sequences are processed 7SL RNA genes.

1. Determinants of CpG islands: expression in early embryo and isochore structure.

2. Use and misuse of correspondence analysis in codon usage studies.

3. Origin of the Alu family: a family of Alu-like monomers gave birth to the left and the right arms of the Alu elements.

Review 4. Modular transposition and the dynamical structure of eukaryote regulatory evolution.

5. Novel families of interspersed repetitive elements from the human genome.

6. Whole-genome analysis of Alu repeat elements reveals complex evolutionary history.

7. Differential binding of human nuclear proteins to Alu subfamilies.

8. Whole genome computational comparative genomics: A fruitful approach for ascertaining Alu insertion polymorphisms.

9. An unusual Alu repeat sequence within the CAD gene.

10. Multiple dispersed loci produce small cytoplasmic Alu RNA.