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Literature DB >> 6253938

DNA methylation and the frequency of CpG in animal DNA.

Abstract

An analysis of nearest neighbour dinucleotide frequencies and the level of DNA methylation in animals strongly supports the suggestion that 5-methylcytosine (5mC) tends to mutate abnormally frequently to T. This tendency is the likely cause of the CpG deficiency in heavily methylated genomes.

Entities: Chemical Disease Gene Mutation

Mesh：

Substances：

Year: 1980 PMID： 6253938 PMCID： PMC324012 DOI： 10.1093/nar/8.7.1499

Source DB: PubMed Journal: Nucleic Acids Res ISSN： 0305-1048 Impact factor: 16.971

21 in total

1. The nucleotide sequence of somatic 5 S RNA from Xenopus laevis.

Authors: G G. Brownlee; E Cartwright; T McShane; R Williamson
Journal: FEBS Lett Date: 1972-09-01 Impact factor: 4.124

2. Enzymatic synthesis of deoxyribonucleic acid. VIII. Frequencies of nearest neighbor base sequences in deoxyribonucleic acid.

Authors: J JOSSE; A D KAISER; A KORNBERG
Journal: J Biol Chem Date: 1961-03 Impact factor: 5.157

3. Molecular basis of base substitution hotspots in Escherichia coli.

Authors: C Coulondre; J H Miller; P J Farabaugh; W Gilbert
Journal: Nature Date: 1978-08-24 Impact factor: 49.962

4. Rare bases in animal DNA.

Authors: B F Vanyushin; S G Tkacheva; A N Belozersky
Journal: Nature Date: 1970-03-07 Impact factor: 49.962

5. An approach to evolutionary relationships of mammalian DNA viruses through analysis of the pattern of nearest neighbor base sequences.

Authors: H Subak-Sharpe; R R Bürk; L V Crawford; J M Morrison; J Hay; H M Keir
Journal: Cold Spring Harb Symp Quant Biol Date: 1966

6. Similarity of the general designs of protochordates and invertebrates.

Authors: G J Russell; J H Subak-Sharpe
Journal: Nature Date: 1977-04-07 Impact factor: 49.962

7. Variable patterns of total DNA and rDNA methylation in animals.

Authors: A P Bird; M H Taggart
Journal: Nucleic Acids Res Date: 1980-04-11 Impact factor: 16.971

8. MspI, an isoschizomer of hpaII which cleaves both unmethylated and methylated hpaII sites.

Authors: C Waalwijk; R A Flavell
Journal: Nucleic Acids Res Date: 1978-09 Impact factor: 16.971

9. Absence of cytosine methylation at C-C-G-G and G-C-G-C sites in the rDNA coding regions and intervening sequences of Drosophila and the rDNA of other insects.

Authors: P M Rae; R E Steele
Journal: Nucleic Acids Res Date: 1979-07-11 Impact factor: 16.971

8. Respective roles of pyrimidine dimer and pyrimidine (6-4) pyrimidone photoproducts in UV mutagenesis of simian virus 40 DNA in mammalian cells.

Authors: F Bourre; A Benoit; A Sarasin
Journal: J Virol Date: 1989-11 Impact factor: 5.103

9. Methylation-Induced Hypermutation in Natural Populations of Bacteria.

Authors: Joshua L Cherry
Journal: J Bacteriol Date: 2018-11-26 Impact factor: 3.490

10. Different clustering of genomes across life using the A-T-C-G and degenerate R-Y alphabets: early and late signaling on genome evolution?

Authors: V Kirzhner; A Paz; Z Volkovich; E Nevo; A Korol
Journal: J Mol Evol Date: 2007-03-19 Impact factor: 2.395

DNA methylation and the frequency of CpG in animal DNA.

1. The nucleotide sequence of somatic 5 S RNA from Xenopus laevis.

2. Enzymatic synthesis of deoxyribonucleic acid. VIII. Frequencies of nearest neighbor base sequences in deoxyribonucleic acid.

3. Molecular basis of base substitution hotspots in Escherichia coli.

4. Rare bases in animal DNA.

5. An approach to evolutionary relationships of mammalian DNA viruses through analysis of the pattern of nearest neighbor base sequences.

6. Similarity of the general designs of protochordates and invertebrates.

7. Variable patterns of total DNA and rDNA methylation in animals.

8. MspI, an isoschizomer of hpaII which cleaves both unmethylated and methylated hpaII sites.

9. Absence of cytosine methylation at C-C-G-G and G-C-G-C sites in the rDNA coding regions and intervening sequences of Drosophila and the rDNA of other insects.

10. Methylation of mouse liver DNA studied by means of the restriction enzymes msp I and hpa II.

Review 1. Introduction to immunostimulatory DNA sequences.

2. Deoxyribonucleic acid methylation and chromatin organization in Tetrahymena thermophila.

3. Duplication-dependent CG suppression of the seed storage protein genes of maize.

4. Neutral substitutions occur at a faster rate in exons than in noncoding DNA in primate genomes.

5. Sources and predictors of resolvable indel polymorphism assessed using rice as a model.

6. Gene expression intensity shapes evolutionary rates of the proteins encoded by the vertebrate genome.

Review 7. Modern approaches for investigating epigenetic signaling pathways.

8. Respective roles of pyrimidine dimer and pyrimidine (6-4) pyrimidone photoproducts in UV mutagenesis of simian virus 40 DNA in mammalian cells.

9. Methylation-Induced Hypermutation in Natural Populations of Bacteria.

10. Different clustering of genomes across life using the A-T-C-G and degenerate R-Y alphabets: early and late signaling on genome evolution?