Literature DB >> 2106661

Novel families of interspersed repetitive elements from the human genome.

J Jurka1.   

Abstract

Six novel families of interspersed repetitive elements have been detected in the available human DNA sequences using computer-assisted analyses. The estimated total number of elements in the reported six families is over 17,000. Sequences representative for each family range from approximately 150 to 650 base pairs (bp) in length and are predominantly (A + T)-rich. Sequences from four families contain stretches of patchy complementarity up to 45 bp long. Member of one of the families is likely be directly involved in a multigene deletion on chromosome 14. Two of the six sequence families are homologous to 'low reiteration frequency sequences' from monkey cells, detected first in defective variants of simian virus 40. Like Alu and L1 families, the newly discovered families are probably composed of pseudogenes derived from functional genes.

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Year:  1990        PMID: 2106661      PMCID: PMC330213          DOI: 10.1093/nar/18.1.137

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  35 in total

1.  Structure of simian virus 40 recombinants that contain both host and viral DNA sequences. I. The structure of variant CVPS/1/P2 (EcoRI res).

Authors:  T Wakamiya; T McCutchan; M Rosenberg; M Singer
Journal:  J Biol Chem       Date:  1979-05-10       Impact factor: 5.157

2.  Nucleotide sequence of the gene for human prothrombin.

Authors:  S J Degen; E W Davie
Journal:  Biochemistry       Date:  1987-09-22       Impact factor: 3.162

3.  Multiple aligned sequence editor (MASE).

Authors:  D V Faulkner; J Jurka
Journal:  Trends Biochem Sci       Date:  1988-08       Impact factor: 13.807

4.  Identification of common molecular subsequences.

Authors:  T F Smith; M S Waterman
Journal:  J Mol Biol       Date:  1981-03-25       Impact factor: 5.469

5.  Rapid similarity searches of nucleic acid and protein data banks.

Authors:  W J Wilbur; D J Lipman
Journal:  Proc Natl Acad Sci U S A       Date:  1983-02       Impact factor: 11.205

6.  A large interspersed repeat found in mouse DNA contains a long open reading frame that evolves as if it encodes a protein.

Authors:  S L Martin; C F Voliva; F H Burton; M H Edgell; C A Hutchison
Journal:  Proc Natl Acad Sci U S A       Date:  1984-04       Impact factor: 11.205

7.  Isolation and sequence analysis of the human apolipoprotein CIII gene and the intergenic region between the apo AI and apo CIII genes.

Authors:  A A Protter; B Levy-Wilson; J Miller; G Bencen; T White; J J Seilhamer
Journal:  DNA       Date:  1984-12

8.  Human dihydrofolate reductase gene organization. Extensive conservation of the G + C-rich 5' non-coding sequence and strong intron size divergence from homologous mammalian genes.

Authors:  J K Yang; J N Masters; G Attardi
Journal:  J Mol Biol       Date:  1984-06-25       Impact factor: 5.469

9.  Human beta-nerve growth factor gene sequence highly homologous to that of mouse.

Authors:  A Ullrich; A Gray; C Berman; T J Dull
Journal:  Nature       Date:  1983-06-30       Impact factor: 49.962

10.  Recombination in simian virus 40-infected cells. Structure of naturally arising variants ev-2114, ev-2102, and ev-1110.

Authors:  L Sheflin; A Celeste; M Woodworth-Gutai
Journal:  J Biol Chem       Date:  1983-12-10       Impact factor: 5.157

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  21 in total

1.  Prototypic sequences for human repetitive DNA.

Authors:  J Jurka; J Walichiewicz; A Milosavljevic
Journal:  J Mol Evol       Date:  1992-10       Impact factor: 2.395

2.  Fluidity of the 350 bp tandemly repeated DNA family of Brassica nigra.

Authors:  S Harbinder; V Gupta; M Lakshmikumaran
Journal:  Plant Mol Biol       Date:  1992-04       Impact factor: 4.076

3.  Distribution of interspersed repeats (Alu and Kpn) on NotI restriction fragments of human chromosome 21.

Authors:  J Sainz; L Pevny; Y Wu; C R Cantor; C L Smith
Journal:  Proc Natl Acad Sci U S A       Date:  1992-02-01       Impact factor: 11.205

4.  Medium reiteration frequency repetitive sequences in the human genome.

Authors:  D J Kaplan; J Jurka; J F Solus; C H Duncan
Journal:  Nucleic Acids Res       Date:  1991-09-11       Impact factor: 16.971

5.  Free left arms as precursor molecules in the evolution of Alu sequences.

Authors:  J Jurka; E Zuckerkandl
Journal:  J Mol Evol       Date:  1991-07       Impact factor: 2.395

6.  Ubiquitous mammalian-wide interspersed repeats (MIRs) are molecular fossils from the mesozoic era.

Authors:  J Jurka; E Zietkiewicz; D Labuda
Journal:  Nucleic Acids Res       Date:  1995-01-11       Impact factor: 16.971

7.  Cloning and genomic characterization of LST1: a new gene in the human TNF region.

Authors:  I Holzinger; A de Baey; G Messer; G Kick; H Zwierzina; E H Weiss
Journal:  Immunogenetics       Date:  1995       Impact factor: 2.846

8.  The rates and patterns of deletions in the human factor IX gene.

Authors:  R P Ketterling; E L Vielhaber; T J Lind; E C Thorland; S S Sommer
Journal:  Am J Hum Genet       Date:  1994-02       Impact factor: 11.025

9.  Tiggers and DNA transposon fossils in the human genome.

Authors:  A F Smit; A D Riggs
Journal:  Proc Natl Acad Sci U S A       Date:  1996-02-20       Impact factor: 11.205

10.  Closely linked cis-acting modifier of expansion of the CGG repeat in high risk FMR1 haplotypes.

Authors:  S Ennis; A Murray; G Brightwell; N E Morton; P A Jacobs
Journal:  Hum Mutat       Date:  2007-12       Impact factor: 4.878

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