Literature DB >> 31259199

Multisite evaluation of radiomic feature reproducibility and discriminability for identifying peripheral zone prostate tumors on MRI.

Prathyush Chirra1, Patrick Leo1, Michael Yim2, B Nicolas Bloch3, Ardeshir R Rastinehad4, Andrei Purysko5, Mark Rosen6, Anant Madabhushi1,7, Satish E Viswanath1.   

Abstract

Recent advances in the field of radiomics have enabled the development of a number of prognostic and predictive imaging-based tools for a variety of diseases. However, wider clinical adoption of these tools is contingent on their generalizability across multiple sites and scanners. This may be particularly relevant in the context of radiomic features derived from T1- or T2-weighted magnetic resonance images (MRIs), where signal intensity values are known to lack tissue-specific meaning and vary based on differing acquisition protocols between institutions. We present the first empirical study of benchmarking five different radiomic feature families in terms of both reproducibility and discriminability in a multisite setting, specifically, for identifying prostate tumors in the peripheral zone on MRI. Our cohort comprised 147 patient T2-weighted MRI datasets from four different sites, all of which are first preprocessed to correct for acquisition-related artifacts such as bias field, differing voxel resolutions, and intensity drift (nonstandardness). About 406 three-dimensional voxel-wise radiomic features from five different families (gray, Haralick, gradient, Laws, and Gabor) were evaluated in a cross-site setting to determine (a) how reproducible they are within a relatively homogeneous nontumor tissue region and (b) how well they could discriminate tumor regions from nontumor regions. Our results demonstrate that a majority of the popular Haralick features are reproducible in over 99% of all cross-site comparisons, as well as achieve excellent cross-site discriminability (classification accuracy of ≈ 0.8 ). By contrast, a majority of Laws features are highly variable across sites (reproducible in < 75 % of all cross-site comparisons) as well as resulting in low cross-site classifier accuracies ( < 0.6 ), likely due to a large number of noisy filter responses that can be extracted. These trends suggest that only a subset of radiomic features and associated parameters may be both reproducible and discriminable enough for use within machine learning classifier schemes.

Entities:  

Keywords:  discriminability; feature analysis; magnetic resonance imaging; multisite; prostate; radiomics; reproducibility; stability

Year:  2019        PMID: 31259199      PMCID: PMC6566001          DOI: 10.1117/1.JMI.6.2.024502

Source DB:  PubMed          Journal:  J Med Imaging (Bellingham)        ISSN: 2329-4302


  38 in total

1.  Rapid and effective correction of RF inhomogeneity for high field magnetic resonance imaging.

Authors:  M S Cohen; R M DuBois; M M Zeineh
Journal:  Hum Brain Mapp       Date:  2000-08       Impact factor: 5.038

2.  A novel definition of the multivariate coefficient of variation.

Authors:  Adelin Albert; Lixin Zhang
Journal:  Biom J       Date:  2010-10       Impact factor: 2.207

3.  Interplay between intensity standardization and inhomogeneity correction in MR image processing.

Authors:  Anant Madabhushi; Jayaram K Udupa
Journal:  IEEE Trans Med Imaging       Date:  2005-05       Impact factor: 10.048

4.  Prostate volume contouring: a 3D analysis of segmentation using 3DTRUS, CT, and MR.

Authors:  Wendy L Smith; Craig Lewis; Glenn Bauman; George Rodrigues; David D'Souza; Robert Ash; Derek Ho; Varagur Venkatesan; Dónal Downey; Aaron Fenster
Journal:  Int J Radiat Oncol Biol Phys       Date:  2007-03-15       Impact factor: 7.038

Review 5.  Radiomics: the process and the challenges.

Authors:  Virendra Kumar; Yuhua Gu; Satrajit Basu; Anders Berglund; Steven A Eschrich; Matthew B Schabath; Kenneth Forster; Hugo J W L Aerts; Andre Dekker; David Fenstermacher; Dmitry B Goldgof; Lawrence O Hall; Philippe Lambin; Yoganand Balagurunathan; Robert A Gatenby; Robert J Gillies
Journal:  Magn Reson Imaging       Date:  2012-08-13       Impact factor: 2.546

6.  New variants of a method of MRI scale standardization.

Authors:  L G Nyúl; J K Udupa; X Zhang
Journal:  IEEE Trans Med Imaging       Date:  2000-02       Impact factor: 10.048

7.  Central gland and peripheral zone prostate tumors have significantly different quantitative imaging signatures on 3 Tesla endorectal, in vivo T2-weighted MR imagery.

Authors:  Satish E Viswanath; Nicholas B Bloch; Jonathan C Chappelow; Robert Toth; Neil M Rofsky; Elizabeth M Genega; Robert E Lenkinski; Anant Madabhushi
Journal:  J Magn Reson Imaging       Date:  2012-02-15       Impact factor: 4.813

8.  Stability of FDG-PET Radiomics features: an integrated analysis of test-retest and inter-observer variability.

Authors:  Ralph T H Leijenaar; Sara Carvalho; Emmanuel Rios Velazquez; Wouter J C van Elmpt; Chintan Parmar; Otto S Hoekstra; Corneline J Hoekstra; Ronald Boellaard; André L A J Dekker; Robert J Gillies; Hugo J W L Aerts; Philippe Lambin
Journal:  Acta Oncol       Date:  2013-09-09       Impact factor: 4.089

9.  Test-retest reproducibility analysis of lung CT image features.

Authors:  Yoganand Balagurunathan; Virendra Kumar; Yuhua Gu; Jongphil Kim; Hua Wang; Ying Liu; Dmitry B Goldgof; Lawrence O Hall; Rene Korn; Binsheng Zhao; Lawrence H Schwartz; Satrajit Basu; Steven Eschrich; Robert A Gatenby; Robert J Gillies
Journal:  J Digit Imaging       Date:  2014-12       Impact factor: 4.056

10.  Interplay between bias field correction, intensity standardization, and noise filtering for T2-weighted MRI.

Authors:  Daniel Palumbo; Brian Yee; Patrick O'Dea; Shane Leedy; Satish Viswanath; Anant Madabhushi
Journal:  Annu Int Conf IEEE Eng Med Biol Soc       Date:  2011
View more
  13 in total

1.  A novel radiomics signature based on T2-weighted imaging accurately predicts hepatic inflammation in individuals with biopsy-proven nonalcoholic fatty liver disease: a derivation and independent validation study.

Authors:  Zhong-Wei Chen; Huan-Ming Xiao; Xinjian Ye; Kun Liu; Rafael S Rios; Kenneth I Zheng; Yi Jin; Giovanni Targher; Christopher D Byrne; Junping Shi; Zhihan Yan; Xiao-Ling Chi; Ming-Hua Zheng
Journal:  Hepatobiliary Surg Nutr       Date:  2022-04       Impact factor: 7.293

Review 2.  Challenges in ensuring the generalizability of image quantitation methods for MRI.

Authors:  Kathryn E Keenan; Jana G Delfino; Kalina V Jordanova; Megan E Poorman; Prathyush Chirra; Akshay S Chaudhari; Bettina Baessler; Jessica Winfield; Satish E Viswanath; Nandita M deSouza
Journal:  Med Phys       Date:  2021-09-29       Impact factor: 4.506

Review 3.  Predicting cancer outcomes with radiomics and artificial intelligence in radiology.

Authors:  Kaustav Bera; Nathaniel Braman; Amit Gupta; Vamsidhar Velcheti; Anant Madabhushi
Journal:  Nat Rev Clin Oncol       Date:  2021-10-18       Impact factor: 65.011

4.  Repeatability of radiomics and machine learning for DWI: Short-term repeatability study of 112 patients with prostate cancer.

Authors:  Harri Merisaari; Pekka Taimen; Rakesh Shiradkar; Otto Ettala; Marko Pesola; Jani Saunavaara; Peter J Boström; Anant Madabhushi; Hannu J Aronen; Ivan Jambor
Journal:  Magn Reson Med       Date:  2019-11-08       Impact factor: 4.668

5.  The Pursuit of Generalizability to Enable Clinical Translation of Radiomics.

Authors:  Pallavi Tiwari; Ruchika Verma
Journal:  Radiol Artif Intell       Date:  2020-12-16

6.  Distinguishing granulomas from adenocarcinomas by integrating stable and discriminating radiomic features on non-contrast computed tomography scans.

Authors:  Mohammadhadi Khorrami; Kaustav Bera; Rajat Thawani; Prabhakar Rajiah; Amit Gupta; Pingfu Fu; Philip Linden; Nathan Pennell; Frank Jacono; Robert C Gilkeson; Vamsidhar Velcheti; Anant Madabhushi
Journal:  Eur J Cancer       Date:  2021-03-17       Impact factor: 9.162

7.  Prospective Evaluation of Repeatability and Robustness of Radiomic Descriptors in Healthy Brain Tissue Regions In Vivo Across Systematic Variations in T2-Weighted Magnetic Resonance Imaging Acquisition Parameters.

Authors:  Brendan Eck; Prathyush V Chirra; Avani Muchhala; Sophia Hall; Kaustav Bera; Pallavi Tiwari; Anant Madabhushi; Nicole Seiberlich; Satish E Viswanath
Journal:  J Magn Reson Imaging       Date:  2021-04-16       Impact factor: 5.119

8.  Influence of Magnetic Field Strength on Magnetic Resonance Imaging Radiomics Features in Brain Imaging, an In Vitro and In Vivo Study.

Authors:  Samy Ammari; Stephanie Pitre-Champagnat; Laurent Dercle; Emilie Chouzenoux; Salma Moalla; Sylvain Reuze; Hugues Talbot; Tite Mokoyoko; Joya Hadchiti; Sebastien Diffetocq; Andreas Volk; Mickeal El Haik; Sara Lakiss; Corinne Balleyguier; Nathalie Lassau; Francois Bidault
Journal:  Front Oncol       Date:  2021-01-20       Impact factor: 6.244

9.  Radiomic Features of Multiparametric MRI Present Stable Associations With Analogous Histological Features in Patients With Brain Cancer.

Authors:  Samuel A Bobholz; Allison K Lowman; Alexander Barrington; Michael Brehler; Sean McGarry; Elizabeth J Cochran; Jennifer Connelly; Wade M Mueller; Mohit Agarwal; Darren O'Neill; Andrew S Nencka; Anjishnu Banerjee; Peter S LaViolette
Journal:  Tomography       Date:  2020-06

10.  Correction for Magnetic Field Inhomogeneities and Normalization of Voxel Values Are Needed to Better Reveal the Potential of MR Radiomic Features in Lung Cancer.

Authors:  Maxime Lacroix; Frédérique Frouin; Anne-Sophie Dirand; Christophe Nioche; Fanny Orlhac; Jean-François Bernaudin; Pierre-Yves Brillet; Irène Buvat
Journal:  Front Oncol       Date:  2020-01-31       Impact factor: 6.244

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.