Literature DB >> 32501772

Integrated Biophysical Modeling and Image Analysis: Application to Neuro-Oncology.

Andreas Mang1, Spyridon Bakas1, Shashank Subramanian2, Christos Davatzikos3, George Biros2.   

Abstract

Central nervous system (CNS) tumors come with vastly heterogeneous histologic, molecular, and radiographic landscapes, rendering their precise characterization challenging. The rapidly growing fields of biophysical modeling and radiomics have shown promise in better characterizing the molecular, spatial, and temporal heterogeneity of tumors. Integrative analysis of CNS tumors, including clinically acquired multi-parametric magnetic resonance imaging (mpMRI) and the inverse problem of calibrating biophysical models to mpMRI data, assists in identifying macroscopic quantifiable tumor patterns of invasion and proliferation, potentially leading to improved (a) detection/segmentation of tumor subregions and (b) computer-aided diagnostic/prognostic/predictive modeling. This article presents a summary of (a) biophysical growth modeling and simulation,(b) inverse problems for model calibration, (c) these models' integration with imaging workflows, and (d) their application to clinically relevant studies. We anticipate that such quantitative integrative analysis may even be beneficial in a future revision of the World Health Organization (WHO) classification for CNS tumors, ultimately improving patient survival prospects.

Entities:  

Keywords:  biophysical modeling; glioblastoma; image analysis; model calibration; multi-parametric imaging; radiomics; tumor growth

Year:  2020        PMID: 32501772      PMCID: PMC7520881          DOI: 10.1146/annurev-bioeng-062117-121105

Source DB:  PubMed          Journal:  Annu Rev Biomed Eng        ISSN: 1523-9829            Impact factor:   9.590


  135 in total

1.  'Go or grow': the key to the emergence of invasion in tumour progression?

Authors:  H Hatzikirou; D Basanta; M Simon; K Schaller; A Deutsch
Journal:  Math Med Biol       Date:  2010-07-07       Impact factor: 1.854

2.  Evaluation of peritumoral edema in the delineation of radiotherapy clinical target volumes for glioblastoma.

Authors:  Eric L Chang; Serap Akyurek; Tedde Avalos; Neal Rebueno; Chris Spicer; John Garcia; Robin Famiglietti; Pamela K Allen; K S Clifford Chao; Anita Mahajan; Shiao Y Woo; Moshe H Maor
Journal:  Int J Radiat Oncol Biol Phys       Date:  2007-02-15       Impact factor: 7.038

3.  Probabilistic radiographic atlas of glioblastoma phenotypes.

Authors:  B M Ellingson; A Lai; R J Harris; J M Selfridge; W H Yong; K Das; W B Pope; P L Nghiemphu; H V Vinters; L M Liau; P S Mischel; T F Cloughesy
Journal:  AJNR Am J Neuroradiol       Date:  2012-09-20       Impact factor: 3.825

4.  Tumor growth prediction with reaction-diffusion and hyperelastic biomechanical model by physiological data fusion.

Authors:  Ken C L Wong; Ronald M Summers; Electron Kebebew; Jianhua Yao
Journal:  Med Image Anal       Date:  2015-04-17       Impact factor: 8.545

5.  A quantitative model for differential motility of gliomas in grey and white matter.

Authors:  K R Swanson; E C Alvord; J D Murray
Journal:  Cell Prolif       Date:  2000-10       Impact factor: 6.831

6.  Selection and Validation of Predictive Models of Radiation Effects on Tumor Growth Based on Noninvasive Imaging Data.

Authors:  E A B F Lima; J T Oden; B Wohlmuth; A Shahmoradi; D A Hormuth; T E Yankeelov; L Scarabosio; T Horger
Journal:  Comput Methods Appl Mech Eng       Date:  2017-08-18       Impact factor: 6.756

7.  Addition of MR imaging features and genetic biomarkers strengthens glioblastoma survival prediction in TCGA patients.

Authors:  Manal Nicolasjilwan; Ying Hu; Chunhua Yan; Daoud Meerzaman; Chad A Holder; David Gutman; Rajan Jain; Rivka Colen; Daniel L Rubin; Pascal O Zinn; Scott N Hwang; Prashant Raghavan; Dima A Hammoud; Lisa M Scarpace; Tom Mikkelsen; James Chen; Olivier Gevaert; Kenneth Buetow; John Freymann; Justin Kirby; Adam E Flanders; Max Wintermark
Journal:  J Neuroradiol       Date:  2014-07-02       Impact factor: 3.447

8.  Radiogenomics: what it is and why it is important.

Authors:  Maciej A Mazurowski
Journal:  J Am Coll Radiol       Date:  2015-08       Impact factor: 5.532

9.  Patient-specific metrics of invasiveness reveal significant prognostic benefit of resection in a predictable subset of gliomas.

Authors:  Anne L Baldock; Sunyoung Ahn; Russell Rockne; Sandra Johnston; Maxwell Neal; David Corwin; Kamala Clark-Swanson; Greg Sterin; Andrew D Trister; Hani Malone; Victoria Ebiana; Adam M Sonabend; Maciej Mrugala; Jason K Rockhill; Daniel L Silbergeld; Albert Lai; Timothy Cloughesy; Guy M McKhann; Jeffrey N Bruce; Robert C Rostomily; Peter Canoll; Kristin R Swanson
Journal:  PLoS One       Date:  2014-10-28       Impact factor: 3.240

10.  Radiogenomic analysis of hypoxia pathway is predictive of overall survival in Glioblastoma.

Authors:  Niha Beig; Jay Patel; Prateek Prasanna; Virginia Hill; Amit Gupta; Ramon Correa; Kaustav Bera; Salendra Singh; Sasan Partovi; Vinay Varadan; Manmeet Ahluwalia; Anant Madabhushi; Pallavi Tiwari
Journal:  Sci Rep       Date:  2018-01-08       Impact factor: 4.379

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  11 in total

1.  Computer-aided diagnosis and regional segmentation of nasopharyngeal carcinoma based on multi-modality medical images.

Authors:  Yuxiao Qi; Jieyu Li; Huai Chen; Yujie Guo; Yong Yin; Guanzhong Gong; Lisheng Wang
Journal:  Int J Comput Assist Radiol Surg       Date:  2021-03-29       Impact factor: 2.924

Review 2.  Integrating mechanism-based modeling with biomedical imaging to build practical digital twins for clinical oncology.

Authors:  Chengyue Wu; Guillermo Lorenzo; David A Hormuth; Ernesto A B F Lima; Kalina P Slavkova; Julie C DiCarlo; John Virostko; Caleb M Phillips; Debra Patt; Caroline Chung; Thomas E Yankeelov
Journal:  Biophys Rev (Melville)       Date:  2022-05-17

3.  Classification of Infection and Ischemia in Diabetic Foot Ulcers Using VGG Architectures.

Authors:  Orhun Güley; Sarthak Pati; Spyridon Bakas
Journal:  Diabet Foot Ulcers Grand Chall (2021)       Date:  2022-01-01

4.  Enhancing the REMBRANDT MRI collection with expert segmentation labels and quantitative radiomic features.

Authors:  Anousheh Sayah; Camelia Bencheqroun; Krithika Bhuvaneshwar; Anas Belouali; Spyridon Bakas; Chiharu Sako; Christos Davatzikos; Adil Alaoui; Subha Madhavan; Yuriy Gusev
Journal:  Sci Data       Date:  2022-06-14       Impact factor: 8.501

Review 5.  Integrating Quantitative Assays with Biologically Based Mathematical Modeling for Predictive Oncology.

Authors:  Anum S Kazerouni; Manasa Gadde; Andrea Gardner; David A Hormuth; Angela M Jarrett; Kaitlyn E Johnson; Ernesto A B F Lima; Guillermo Lorenzo; Caleb Phillips; Amy Brock; Thomas E Yankeelov
Journal:  iScience       Date:  2020-11-13

6.  B4GalT1 Regulates Apoptosis and Autophagy of Glioblastoma In Vitro and In Vivo.

Authors:  Pu Wang; Xiaolong Li; Yuan Xie
Journal:  Technol Cancer Res Treat       Date:  2020 Jan-Dec

7.  CLAIRE: Constrained Large Deformation Diffeomorphic Image Registration on Parallel Computing Architectures.

Authors:  Malte Brunn; Naveen Himthani; George Biros; Miriam Mehl; Andreas Mang
Journal:  J Open Source Softw       Date:  2021-05-30

8.  Modelling glioma progression, mass effect and intracranial pressure in patient anatomy.

Authors:  Jana Lipková; Bjoern Menze; Benedikt Wiestler; Petros Koumoutsakos; John S Lowengrub
Journal:  J R Soc Interface       Date:  2022-03-23       Impact factor: 4.118

9.  The University of Pennsylvania glioblastoma (UPenn-GBM) cohort: advanced MRI, clinical, genomics, & radiomics.

Authors:  Spyridon Bakas; Chiharu Sako; Hamed Akbari; Michel Bilello; Aristeidis Sotiras; Gaurav Shukla; Jeffrey D Rudie; Natali Flores Santamaría; Anahita Fathi Kazerooni; Sarthak Pati; Saima Rathore; Elizabeth Mamourian; Sung Min Ha; William Parker; Jimit Doshi; Ujjwal Baid; Mark Bergman; Zev A Binder; Ragini Verma; Robert A Lustig; Arati S Desai; Stephen J Bagley; Zissimos Mourelatos; Jennifer Morrissette; Christopher D Watt; Steven Brem; Ronald L Wolf; Elias R Melhem; MacLean P Nasrallah; Suyash Mohan; Donald M O'Rourke; Christos Davatzikos
Journal:  Sci Data       Date:  2022-07-29       Impact factor: 8.501

10.  Fibre tract segmentation for intraoperative diffusion MRI in neurosurgical patients using tract-specific orientation atlas and tumour deformation modelling.

Authors:  Fiona Young; Kristian Aquilina; Chris A Clark; Jonathan D Clayden
Journal:  Int J Comput Assist Radiol Surg       Date:  2022-04-25       Impact factor: 3.421

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