Literature DB >> 31141351

Molecular Dynamics Simulations of Ionic Liquids and Electrolytes Using Polarizable Force Fields.

Dmitry Bedrov1, Jean-Philip Piquemal2,3,4, Oleg Borodin5, Alexander D MacKerell6, Benoît Roux7, Christian Schröder8.   

Abstract

Many applications in chemistry, biology, and energy storage/conversion research rely on molecular simulations to provide fundamental insight into structural and transport properties of materials with high ionic concentrations. Whether the system is comprised entirely of ions, like ionic liquids, or is a mixture of a polar solvent with a salt, e.g., liquid electrolytes for battery applications, the presence of ions in these materials results in strong local electric fields polarizing solvent molecules and large ions. To predict properties of such systems from molecular simulations often requires either explicit or mean-field inclusion of the influence of polarization on electrostatic interactions. In this manuscript, we review the pros and cons of different treatments of polarization ranging from the mean-field approaches to the most popular explicit polarization models in molecular dynamics simulations of ionic materials. For each method, we discuss their advantages and disadvantages and emphasize key assumptions as well as their adjustable parameters. Strategies for the development of polarizable models are presented with a specific focus on extracting atomic polarizabilities. Finally, we compare simulations using polarizable and nonpolarizable models for several classes of ionic systems, discussing the underlying physics that each approach includes or ignores, implications for implementation and computational efficiency, and the accuracy of properties predicted by these methods compared to experiments.

Entities:  

Year:  2019        PMID: 31141351      PMCID: PMC6620131          DOI: 10.1021/acs.chemrev.8b00763

Source DB:  PubMed          Journal:  Chem Rev        ISSN: 0009-2665            Impact factor:   60.622


  308 in total

1.  A CSOV study of the difference between HF and DFT intermolecular interaction energy values: the importance of the charge transfer contribution.

Authors:  Jean-Philip Piquemal; Antonio Marquez; Olivier Parisel; Claude Giessner-Prettre
Journal:  J Comput Chem       Date:  2005-07-30       Impact factor: 3.376

2.  Theoretical study of the hydrated Gd3+ ion: structure, dynamics, and charge transfer.

Authors:  Carine Clavaguéra; Florent Calvo; Jean-Pierre Dognon
Journal:  J Chem Phys       Date:  2006-02-21       Impact factor: 3.488

3.  A systematic development of a polarizable potential of water.

Authors:  Péter T Kiss; András Baranyai
Journal:  J Chem Phys       Date:  2013-05-28       Impact factor: 3.488

4.  A Refined All-Atom Potential for Imidazolium-Based Room Temperature Ionic Liquids: Acetate, Dicyanamide, and Thiocyanate Anions.

Authors:  Anirban Mondal; Sundaram Balasubramanian
Journal:  J Phys Chem B       Date:  2015-05-01       Impact factor: 2.991

5.  Fast divide-and-conquer algorithm for evaluating polarization in classical force fields.

Authors:  Dominique Nocito; Gregory J O Beran
Journal:  J Chem Phys       Date:  2017-03-21       Impact factor: 3.488

6.  Molecular dynamics simulation of room-temperature ionic liquid mixture of [bmim][BF4] and acetonitrile by a refined force field.

Authors:  Xiaoping Wu; Zhiping Liu; Shiping Huang; Wenchuan Wang
Journal:  Phys Chem Chem Phys       Date:  2005-06-20       Impact factor: 3.676

7.  Simulations of the water exchange dynamics of lanthanide ions in 1-ethyl-3-methylimidazolium ethyl sulfate ([EMIm][EtSO4]) and water.

Authors:  Yi-Jung Tu; Matthew J Allen; G Andrés Cisneros
Journal:  Phys Chem Chem Phys       Date:  2016-11-09       Impact factor: 3.676

8.  Ab initio molecular dynamics of liquid 1,3-dimethylimidazolium chloride.

Authors:  Michael Bühl; Alain Chaumont; Rachel Schurhammer; Georges Wipff
Journal:  J Phys Chem B       Date:  2005-10-06       Impact factor: 2.991

9.  Direct comparisons of experimental and calculated neutron structure factors of pure solvents as a method for force field validation.

Authors:  Jennie L Thomas; Douglas J Tobias; Alexander D Mackerell
Journal:  J Phys Chem B       Date:  2007-10-24       Impact factor: 2.991

10.  An efficient and stable hybrid extended Lagrangian/self-consistent field scheme for solving classical mutual induction.

Authors:  Alex Albaugh; Omar Demerdash; Teresa Head-Gordon
Journal:  J Chem Phys       Date:  2015-11-07       Impact factor: 3.488

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  30 in total

1.  Polarizable molecular dynamics simulations of ionic liquids: Influence of temperature control.

Authors:  Esther Heid; Stefan Boresch; Christian Schröder
Journal:  J Chem Phys       Date:  2020-03-07       Impact factor: 3.488

2.  Machine Learning for Electronically Excited States of Molecules.

Authors:  Julia Westermayr; Philipp Marquetand
Journal:  Chem Rev       Date:  2020-11-19       Impact factor: 60.622

Review 3.  Artificial Intelligence Applied to Battery Research: Hype or Reality?

Authors:  Teo Lombardo; Marc Duquesnoy; Hassna El-Bouysidy; Fabian Årén; Alfonso Gallo-Bueno; Peter Bjørn Jørgensen; Arghya Bhowmik; Arnaud Demortière; Elixabete Ayerbe; Francisco Alcaide; Marine Reynaud; Javier Carrasco; Alexis Grimaud; Chao Zhang; Tejs Vegge; Patrik Johansson; Alejandro A Franco
Journal:  Chem Rev       Date:  2021-09-16       Impact factor: 72.087

4.  The Role of Surface Chemistry in the Orientational Behavior of Water at an Interface.

Authors:  Rowan Walker-Gibbons; Alžbeta Kubincová; Philippe H Hünenberger; Madhavi Krishnan
Journal:  J Phys Chem B       Date:  2022-06-21       Impact factor: 3.466

5.  Aqueous Electrolytes Reinforced by Mg and Ca Ions for Highly Reversible Fe Metal Batteries.

Authors:  Jing Liu; Dengpan Dong; Alan Larrea Caro; Nicolai Sage Andreas; Zongjian Li; Yunan Qin; Dimitry Bedrov; Tao Gao
Journal:  ACS Cent Sci       Date:  2022-05-12       Impact factor: 18.728

6.  Impact of electronic polarizability on protein-functional group interactions.

Authors:  Himanshu Goel; Wenbo Yu; Vincent D Ustach; Asaminew H Aytenfisu; Delin Sun; Alexander D MacKerell
Journal:  Phys Chem Chem Phys       Date:  2020-04-06       Impact factor: 3.676

Review 7.  Computer Simulations of Deep Eutectic Solvents: Challenges, Solutions, and Perspectives.

Authors:  Dmitry Tolmachev; Natalia Lukasheva; Ruslan Ramazanov; Victor Nazarychev; Natalia Borzdun; Igor Volgin; Maria Andreeva; Artyom Glova; Sofia Melnikova; Alexey Dobrovskiy; Steven A Silber; Sergey Larin; Rafael Maglia de Souza; Mauro Carlos Costa Ribeiro; Sergey Lyulin; Mikko Karttunen
Journal:  Int J Mol Sci       Date:  2022-01-07       Impact factor: 5.923

Review 8.  IonoBiology: The functional dynamics of the intracellular metallome, with lessons from bacteria.

Authors:  Leticia Galera-Laporta; Colin J Comerci; Jordi Garcia-Ojalvo; Gürol M Süel
Journal:  Cell Syst       Date:  2021-06-16       Impact factor: 11.091

9.  Advanced Electrostatic Model for Monovalent Ions Based on Ab Initio Energy Decomposition.

Authors:  Zhifeng Jing; Chengwen Liu; Pengyu Ren
Journal:  J Chem Inf Model       Date:  2021-06-07       Impact factor: 6.162

10.  Expression of BMP2-Hydrophobin fusion protein in the tobacco plant and molecular dynamic evaluation of its simulated model.

Authors:  Pouya Rahimifard Hamedani; Mahmood Solouki; Parastoo Ehsani; Abbasali Emamjomeh; Hamideh Ofoghi
Journal:  Plant Biotechnol Rep       Date:  2021-06-11       Impact factor: 2.496

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