Literature DB >> 26547155

An efficient and stable hybrid extended Lagrangian/self-consistent field scheme for solving classical mutual induction.

Alex Albaugh1, Omar Demerdash2, Teresa Head-Gordon1.   

Abstract

We have adapted a hybrid extended Lagrangian self-consistent field (EL/SCF) approach, developed for time reversible Born Oppenheimer molecular dynamics for quantum electronic degrees of freedom, to the problem of classical polarization. In this context, the initial guess for the mutual induction calculation is treated by auxiliary induced dipole variables evolved via a time-reversible velocity Verlet scheme. However, we find numerical instability, which is manifested as an accumulation in the auxiliary velocity variables, that in turn results in an unacceptable increase in the number of SCF cycles to meet even loose convergence tolerances for the real induced dipoles over the course of a 1 ns trajectory of the AMOEBA14 water model. By diagnosing the numerical instability as a problem of resonances that corrupt the dynamics, we introduce a simple thermostating scheme, illustrated using Berendsen weak coupling and Nose-Hoover chain thermostats, applied to the auxiliary dipole velocities. We find that the inertial EL/SCF (iEL/SCF) method provides superior energy conservation with less stringent convergence thresholds and a correspondingly small number of SCF cycles, to reproduce all properties of the polarization model in the NVT and NVE ensembles accurately. Our iEL/SCF approach is a clear improvement over standard SCF approaches to classical mutual induction calculations and would be worth investigating for application to ab initio molecular dynamics as well.

Entities:  

Year:  2015        PMID: 26547155     DOI: 10.1063/1.4933375

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  9 in total

1.  Mapping the Drude polarizable force field onto a multipole and induced dipole model.

Authors:  Jing Huang; Andrew C Simmonett; Frank C Pickard; Alexander D MacKerell; Bernard R Brooks
Journal:  J Chem Phys       Date:  2017-10-28       Impact factor: 3.488

2.  Molecular Dynamics Simulations of Ionic Liquids and Electrolytes Using Polarizable Force Fields.

Authors:  Dmitry Bedrov; Jean-Philip Piquemal; Oleg Borodin; Alexander D MacKerell; Benoît Roux; Christian Schröder
Journal:  Chem Rev       Date:  2019-05-29       Impact factor: 60.622

3.  Force Fields for Small Molecules.

Authors:  Fang-Yu Lin; Alexander D MacKerell
Journal:  Methods Mol Biol       Date:  2019

4.  Tinker 8: Software Tools for Molecular Design.

Authors:  Joshua A Rackers; Zhi Wang; Chao Lu; Marie L Laury; Louis Lagardère; Michael J Schnieders; Jean-Philip Piquemal; Pengyu Ren; Jay W Ponder
Journal:  J Chem Theory Comput       Date:  2018-09-19       Impact factor: 6.006

5.  An empirical extrapolation scheme for efficient treatment of induced dipoles.

Authors:  Andrew C Simmonett; Frank C Pickard; Jay W Ponder; Bernard R Brooks
Journal:  J Chem Phys       Date:  2016-10-28       Impact factor: 3.488

6.  Evaluation of molecular photophysical and photochemical properties using linear response time-dependent density functional theory with classical embedding: Successes and challenges.

Authors:  WanZhen Liang; Zheng Pei; Yuezhi Mao; Yihan Shao
Journal:  J Chem Phys       Date:  2022-06-07       Impact factor: 4.304

Review 7.  Advanced Potential Energy Surfaces for Molecular Simulation.

Authors:  Alex Albaugh; Henry A Boateng; Richard T Bradshaw; Omar N Demerdash; Jacek Dziedzic; Yuezhi Mao; Daniel T Margul; Jason Swails; Qiao Zeng; David A Case; Peter Eastman; Lee-Ping Wang; Jonathan W Essex; Martin Head-Gordon; Vijay S Pande; Jay W Ponder; Yihan Shao; Chris-Kriton Skylaris; Ilian T Todorov; Mark E Tuckerman; Teresa Head-Gordon
Journal:  J Phys Chem B       Date:  2016-09-22       Impact factor: 3.466

8.  Truncated Conjugate Gradient: An Optimal Strategy for the Analytical Evaluation of the Many-Body Polarization Energy and Forces in Molecular Simulations.

Authors:  Félix Aviat; Antoine Levitt; Benjamin Stamm; Yvon Maday; Pengyu Ren; Jay W Ponder; Louis Lagardère; Jean-Philip Piquemal
Journal:  J Chem Theory Comput       Date:  2016-12-08       Impact factor: 6.006

9.  Ab initio molecular dynamics simulations of liquid water using high quality meta-GGA functionals.

Authors:  Luis Ruiz Pestana; Narbe Mardirossian; Martin Head-Gordon; Teresa Head-Gordon
Journal:  Chem Sci       Date:  2017-02-27       Impact factor: 9.825

  9 in total

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