| Literature DB >> 31113874 |
Yang Yang1, Mengxue Fei2, Xinying Zhou1, Yuejun Li1, Dadi Jin3.
Abstract
Objective: The present study was conducted for exploring the influence of fibroblast growth factor 2 receptor (FGFR2) gene polymorphisms on osteoporosis occurrence risk in the Chinese population.Entities:
Keywords: FGFR2; Haplotype; Osteoporosis; Polymorphisms
Year: 2019 PMID: 31113874 PMCID: PMC6549083 DOI: 10.1042/BSR20190275
Source DB: PubMed Journal: Biosci Rep ISSN: 0144-8463 Impact factor: 3.840
PCR primers sequences of FGFR2 polymorphisms
| Polymorphism | Primer sequences (5′-3′) | Restriction enzyme | |
|---|---|---|---|
| rs2981582 | For. | CGTGAGCCAAGCCTCTACTT | |
| Rev. | TAAGTGTGCTGTTCATTCA | ||
| rs1219648 | For. | ATGGTACCGGTTTCCCAA | |
| Rev. | TGTGATTTGTATGTGGTAG | ||
| rs2981579 | For. | GTGACTCCCTTCATCGTG | |
| Rev. | GGCTCCTGGTCTATTTCTC | ||
| rs2420946 | For. | GTGGAAAGGGACGAAGTT | |
| Rev. | TTGGTGGAAGAGTCAGAAGA | ||
The basic characteristics of subjects
| Characteristic | Case, | Control, | ||
|---|---|---|---|---|
| Age (age) | The range | 47–83 | 44–82 | |
| Mean age | 65.63 ± 9.31 | 64.15 ± 8.77 | 0.184 | |
| Gender (%) | Male | 62 (42.76) | 47 (38.21) | 0.450 |
| Female | 83 (57.24) | 76 (61.79) | ||
| BMI (kg/m2) | Mean value | 24.80 ± 2.11 | 24.26 ± 1.95 | 0.030 |
| Smoking (%) | Yes | 37 (25.52) | 24 (19.51) | 0.243 |
| No | 108 (74.48) | 99 (80.49) | ||
| Drinking (%) | Yes | 48 (33.10) | 27 (21.95) | 0.043 |
| No | 97 (66.90) | 96 (78.05) | ||
The genotype and allele frequencies comparison of FGFR2 polymorphisms between the case and control groups
| Genotype/allele | Case, | Control, | OR (95% CI) | ORa (95% CI) | ||||
|---|---|---|---|---|---|---|---|---|
| rs2981582 | CC | 51 (35.17) | 58 (47.15) | Ref. | - | 0.983 | ||
| CT | 68 (46.90) | 53 (43.09) | 1.459 (0.867–2.455) | 0.154 | 1.345 (0.790–2.288) | 0.275 | ||
| TT | 26 (17.93) | 12 (9.76) | 2.464 (1.129–5.379) | 0.021 | 2.085 (0.936–4.644) | 0.072 | ||
| TT vs CC+CT | 119 (82.07) | 111 (90.24) | 2.021 (0.973–4.199) | 0.056 | 1.780 (0.841–3.767) | 0.131 | ||
| TT+CT vs CC | 94 (64.83) | 65 (52.85) | 1.645 (1.006–2.688) | 0.047 | 1.482 (0.895–2.453) | 0.126 | ||
| C | 170 (58.62) | 169 (68.70) | Ref. | - | ||||
| T | 120 (41.38) | 77 (31.30) | 1.549 (1.084–2.213) | 0.016 | 1.419 (0.984–2.045) | 0.061 | ||
| rs2420946 | GG | 36 (24.83) | 45 (36.59) | Ref. | - | 0.609 | ||
| AG | 78 (53.79) | 61 (49.59) | 1.598 (0.921–2.775) | 0.095 | 1.664 (0.944–2.934) | 0.078 | ||
| AA | 31 (21.38) | 17 (13.82) | 2.279 (1.092–4.759) | 0.027 | 2.238 (1.055–4.746) | 0.036 | ||
| AA vs GG+AG | 114 (78.62) | 106 (86.18) | 1.696 (0.887–3.241) | 0.108 | 1.635 (0.841–3.179) | 0.147 | ||
| AA+AG vs. GG | 109 (75.17) | 78 (63.41) | 1.747 (1.032–2.956) | 0.037 | 1.796 (1.048–3.079) | 0.033 | ||
| G | 150 (51.72) | 151 (61.38) | Ref. | - | ||||
| A | 140 (48.28) | 95 (38.62) | 1.484 (1.051–2.094) | 0.025 | 1.482 (1.042–2.109) | 0.029 | ||
| rs1219648 | TT | 32 (22.07) | 42 (34.15) | Ref. | - | 0.238 | ||
| CT | 79 (54.48) | 65 (52.84) | 1.595 (0.907–2.807) | 0.104 | 1.619 (0.905–2.897) | 0.105 | ||
| CC | 34 (23.45) | 16 (13.01) | 2.789 (1.316–5.916) | 0.007 | 2.900 (1.341–6.271) | 0.007 | ||
| CC vs TT+CT | 111 (70.35) | 107 (86.99) | 2.048 (1.068–3.927) | 0.029 | 2.106 (1.082–4.099) | 0.028 | ||
| CC+CT vs. TT | 113 (77.93) | 81 (65.85) | 1.831 (1.066–3.146) | 0.028 | 1.870 (1.070–3.265) | 0.028 | ||
| T | 143 (49.31) | 149 (60.57) | Ref. | - | ||||
| C | 147 (50.69) | 97 (39.43) | 1.579 (1.119–2.228) | 0.009 | 1.602 (1.126–2.279) | 0.009 | ||
| rs2981579 | CC | 27 (18.62) | 35 (28.46) | Ref. | - | 0.965 | ||
| CT | 80 (55.17) | 61 (49.59) | 1.700 (0.931–3.106) | 0.083 | 1.807 (0.875–3.730) | 0.110 | ||
| TT | 38 (26.21) | 27 (21.95) | 1.824 (0.903–3.688) | 0.093 | 1.638 (0.880–3.050) | 0.120 | ||
| TT vs CC+CT | 107 (73.79) | 96 (78.05) | 1.263 (0.718–2.222) | 0.418 | 1.282 (0.717–2.292) | 0.401 | ||
| TT+CT vs CC | 118 (81.83) | 88 (71.54) | 1.738 (0.980-3.083) | 0.057 | 1.690 (0.936–3.051) | 0.082 | ||
| C | 134 (46.21) | 131 (53.25) | Ref. | - | ||||
| T | 156 (53.79) | 115 (46.75) | 1.326 (0.943–1.864) | 0.104 | 1.317 (0.929–1.867) | 0.123 | ||
Note: a: OR and P value was adjusted by clinical parameters; HWE: Hardy-Weinberg equilibrium
The haplotype analysis of FGFR2 polymorphisms in osteoporosis occurrence
| Site1-site2-site3-site4 | Haplotype (%) | OR (95% CI) | ||
|---|---|---|---|---|
| Case, 2n = 290 | Control, 2n = 246 | |||
| C-G-T-C | 90 (31.03) | 104 (42.28) | Ref. | |
| T-A-C-T | 83 (28.62) | 52 (21.14) | 1.844 (1.180–2.884) | 0.007 |
| C-A-C-T | 57 (19.66) | 43 (17.48) | 1.532 (0.942–2.491) | 0.085 |
| T-G-T-C | 37 (12.76) | 25 (10.16) | 1.710 (0.957–3.056) | 0.069 |
| C-G-T-T | 16 (5.52) | 20 (8.13) | 0.924 (0.452–1.890) | 0.830 |
Note: site1: rs2981582; site2: rs2420946; site3: rs1219648; site4: rs2981579
The interaction analysis of FGFR2 polymorphisms and drinking status in osteoporosis risk
| Genotype | Drinking | Case, | Control, | OR (95% CI) | ||
|---|---|---|---|---|---|---|
| rs2981582 | CC | No | 36 | 47 | ||
| CC | Yes | 15 | 11 | 0.202 | 1.780 (0.730–4.339) | |
| CT+TT | No | 61 | 49 | 0.097 | 1.625 (0.915–2.886) | |
| CT+TT | Yes | 33 | 16 | 0.008 | 2.693 (1.287–5.634) | |
| rs2420946 | GG | No | 23 | 35 | ||
| GG | Yes | 13 | 10 | 0.168 | 1.978 (0.744–5.260) | |
| AG+AA | No | 74 | 61 | 0.053 | 1.846 (0.987–3.452) | |
| AG+AA | Yes | 35 | 17 | 0.004 | 3.133 (1.432–6.852) | |
| rs1219648 | TT | No | 21 | 31 | ||
| TT | Yes | 11 | 11 | 0.445 | 1.476 (0.542–4.023) | |
| CT+CC | No | 76 | 65 | 0.096 | 1.726 (0.905–3.291) | |
| CT+CC | Yes | 37 | 16 | 0.002 | 3.414 (1.524–7.648) | |
| rs2981579 | CC | No | 14 | 29 | ||
| CC | Yes | 13 | 6 | 0.009 | 4.488 (1.409–14.298) | |
| CT+TT | No | 83 | 67 | 0.008 | 2.566 (1.256–5.243) | |
| CT+TT | Yes | 35 | 21 | 0.003 | 3.452 (1.496–7.968) |