Literature DB >> 32939523

MicroED in natural product and small molecule research.

Emma Danelius1, Steve Halaby, Wilfred A van der Donk, Tamir Gonen.   

Abstract

Covering: 2013 to 2020The electron cryo-microscopy (cryo-EM) method Microcrystal Electron Diffraction (MicroED) allows the collection of high-resolution structural data from vanishingly small crystals that appear like amorphous powders or very fine needles. Since its debut in 2013, data collection and analysis schemes have been fine-tuned, and there are currently close to 100 structures determined by MicroED. Although originally developed to study proteins, MicroED is also very powerful for smaller systems, with some recent and very promising examples from the field of natural products. Herein, we review what has been achieved so far and provide examples of natural product structures, as well as demonstrate the expected future impact of MicroED to the field of natural product and small molecule research.

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Year:  2020        PMID: 32939523      PMCID: PMC7965795          DOI: 10.1039/d0np00035c

Source DB:  PubMed          Journal:  Nat Prod Rep        ISSN: 0265-0568            Impact factor:   13.423


  92 in total

1.  Sheldrick's 1.2 A rule and beyond.

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Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2003-02-21

2.  Microflow NMR: concepts and capabilities.

Authors:  Dean L Olson; James A Norcross; Mark O'Neil-Johnson; Paul F Molitor; David J Detlefsen; Aaron G Wilson; Timothy L Peck
Journal:  Anal Chem       Date:  2004-05-15       Impact factor: 6.986

3.  A Red Algal Bourbonane Sesquiterpene Synthase Defined by Microgram-Scale NMR-Coupled Crystalline Sponge X-ray Diffraction Analysis.

Authors:  Roland D Kersten; Shoukou Lee; Daishi Fujita; Tomáš Pluskal; Susan Kram; Jennifer E Smith; Takahiro Iwai; Joseph P Noel; Makoto Fujita; Jing-Ke Weng
Journal:  J Am Chem Soc       Date:  2017-11-14       Impact factor: 15.419

4.  Tailoring Tryptophan Synthase TrpB for Selective Quaternary Carbon Bond Formation.

Authors:  Markus Dick; Nicholas S Sarai; Michael W Martynowycz; Tamir Gonen; Frances H Arnold
Journal:  J Am Chem Soc       Date:  2019-12-06       Impact factor: 15.419

5.  What's in a drop? Correlating observations and outcomes to guide macromolecular crystallization experiments.

Authors:  Joseph R Luft; Jennifer R Wolfley; Edward H Snell
Journal:  Cryst Growth Des       Date:  2011-03-02       Impact factor: 4.076

6.  Amyloid fibrils in human insulinoma and islets of Langerhans of the diabetic cat are derived from a neuropeptide-like protein also present in normal islet cells.

Authors:  P Westermark; C Wernstedt; E Wilander; D W Hayden; T D O'Brien; K H Johnson
Journal:  Proc Natl Acad Sci U S A       Date:  1987-06       Impact factor: 11.205

7.  Amylin found in amyloid deposits in human type 2 diabetes mellitus may be a hormone that regulates glycogen metabolism in skeletal muscle.

Authors:  G J Cooper; B Leighton; G D Dimitriadis; M Parry-Billings; J M Kowalchuk; K Howland; J B Rothbard; A C Willis; K B Reid
Journal:  Proc Natl Acad Sci U S A       Date:  1988-10       Impact factor: 11.205

8.  NMR in metabolomics and natural products research: two sides of the same coin.

Authors:  Steven L Robinette; Rafael Brüschweiler; Frank C Schroeder; Arthur S Edison
Journal:  Acc Chem Res       Date:  2011-09-02       Impact factor: 22.384

9.  Ab initio structure determination of nanocrystals of organic pharmaceutical compounds by electron diffraction at room temperature using a Timepix quantum area direct electron detector.

Authors:  E van Genderen; M T B Clabbers; P P Das; A Stewart; I Nederlof; K C Barentsen; Q Portillo; N S Pannu; S Nicolopoulos; T Gruene; J P Abrahams
Journal:  Acta Crystallogr A Found Adv       Date:  2016-02-05       Impact factor: 2.290

10.  Sub-ångström cryo-EM structure of a prion protofibril reveals a polar clasp.

Authors:  Marcus Gallagher-Jones; Calina Glynn; David R Boyer; Michael W Martynowycz; Evelyn Hernandez; Jennifer Miao; Chih-Te Zee; Irina V Novikova; Lukasz Goldschmidt; Heather T McFarlane; Gustavo F Helguera; James E Evans; Michael R Sawaya; Duilio Cascio; David S Eisenberg; Tamir Gonen; Jose A Rodriguez
Journal:  Nat Struct Mol Biol       Date:  2018-01-15       Impact factor: 15.369

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  8 in total

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2.  Structural Elucidation of Cryptic Algaecides in Marine Algal-Bacterial Symbioses by NMR Spectroscopy and MicroED.

Authors:  Jong-Duk Park; Yuchen Li; Kyuho Moon; Esther J Han; Seoung Rak Lee; Mohammad R Seyedsayamdost
Journal:  Angew Chem Int Ed Engl       Date:  2021-12-10       Impact factor: 16.823

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Authors:  Marnix H Medema; Tristan de Rond; Bradley S Moore
Journal:  Nat Rev Genet       Date:  2021-06-03       Impact factor: 53.242

4.  Selecting a stable solid form of remdesivir using microcrystal electron diffraction and crystal structure prediction.

Authors:  Sivakumar Sekharan; Xuetao Liu; Zhuocen Yang; Xiang Liu; Li Deng; Shigang Ruan; Yuriy Abramov; GuangXu Sun; Sizhu Li; Tian Zhou; Baime Shi; Qun Zeng; Qiao Zeng; Chao Chang; Yingdi Jin; Xuekun Shi
Journal:  RSC Adv       Date:  2021-05-12       Impact factor: 4.036

Review 5.  Application of Crystalline Matrices for the Structural Determination of Organic Molecules.

Authors:  Ashley D Cardenal; Timothy R Ramadhar
Journal:  ACS Cent Sci       Date:  2021-02-17       Impact factor: 14.553

Review 6.  Natural product drug discovery in the artificial intelligence era.

Authors:  F I Saldívar-González; V D Aldas-Bulos; J L Medina-Franco; F Plisson
Journal:  Chem Sci       Date:  2021-12-13       Impact factor: 9.825

Review 7.  Demystifying racemic natural products in the homochiral world.

Authors:  Gabin Thierry M Bitchagno; Vaderament-A Nchiozem-Ngnitedem; Dennis Melchert; Serge Alain Fobofou
Journal:  Nat Rev Chem       Date:  2022-10-14       Impact factor: 34.571

Review 8.  Coupling Mass Spectral and Genomic Information to Improve Bacterial Natural Product Discovery Workflows.

Authors:  Max Crüsemann
Journal:  Mar Drugs       Date:  2021-03-05       Impact factor: 5.118

  8 in total

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