| Literature DB >> 31035397 |
Katarzyna Dworaczek1, Maria Kurzylewska2, Magdalena A Karaś3, Monika Janczarek4, Agnieszka Pękala-Safińska5, Anna Turska-Szewczuk6.
Abstract
Lipopolysaccharide (Entities:
Keywords: Aeromonas hydrophila; MALDI-TOF mass spectrometry; NMR spectroscopy; O-antigen; O-polysaccharide; endotoxin; l-Rha4NAc; l-perosamine; lipopolysaccharide (LPS); structure elucidation
Mesh:
Substances:
Year: 2019 PMID: 31035397 PMCID: PMC6562859 DOI: 10.3390/md17050254
Source DB: PubMed Journal: Mar Drugs ISSN: 1660-3397 Impact factor: 5.118
Figure 1Silver-stained SDS-PAGE of the LPS of A. hydrophila strain JCM 3968, O6 (lane 2, and 3, 2 and 3 μg, respectively) and Salmonella enterica sv. Typhimurium (Sigma-Aldrich, St. Louis, MO, USA) as reference (lane 1, 2 μg).
Figure 2MALDI-TOF mass spectra (negative ion mode) of the LPS (a) and the core oligosaccharide (b) of A. hydrophila JCM 3968. The notations indicate: 14 u and 28 u – the differences in CH2 and (CH2)2 in the fatty acid chains, respectively; 42 u - loss of ketene; 44 u – loss of CO2; 98 u – loss of phosphate plus water; 162 u - loss of hexose, 192 u - loss of heptose; LpA - hexaacylated lipid A.
Composition of the main species present in the negative ion MALDI-TOF mass spectra of the LPS (a) and the core oligosaccharide (b) of A. hydrophila JCM 3968.
| [M − H]‒ | [M − H] ‒ | M | Composition |
|---|---|---|---|
| 1570.012 | 1569.946 | 1570.953 | HexN2P2[14:0(3-OH)]2[ |
| 1698.172 | 1698.162 | 1699.169 | HexN2P1[14:0(3-OH)]3[ |
| 1768.187 | 1768.181 | 1769.188 | HexN2P2[14:0(3-OH)]4(12:0)2 |
| 1796.230 | 1796.139 | 1797.146 | HexN2P2[14:0(3-OH)]3[ |
| 1891.587 | 1891.598 | 1892.605 | [Hep6Hex1HexN2Kdo |
| 1935.611 | 1935.588 | 1936.595 | Hep6Hex1HexN2Kdo |
| 1977.615 | 1977.599 | 1978.606 | Hep6Hex1HexN2Ac1Kdo |
| 2555.127 | 2554.846 | 2555.853 | [6dHexNAc2HexN3Ac2Hep6Hex1Kdo |
| 1664.534 | 1664.542 | 1665.550 | Hep5Hex2HexN1Kdo |
| 1694.541 | 1694.553 | 1695.560 | Hep6Hex1HexN1Kdo |
| 1856.592 | 1856.605 | 1857.613 | Hep6Hex2HexN1Kdo |
Figure 31H NMR spectrum of the O-PS of A. hydrophila JCM 3968, serotype O6. The spectrum was recorded in D2O at 32 °C at 500 MHz. Capital letters and Arabic numerals refer to atoms in the sugar residues denoted as shown in Table 2. NAc - N-acetyl groups, IS – acetone as an internal standard (δH 2.225), OMe – O-methyl group, asterisk – free acetic acid.
1H (500 MHz) and 13C NMR (125 MHz) data (δ, ppm) for the O-PS of A. hydrophila strain JCM 3968.
| Sugar Residue | Chemical Shifts (δ, ppm) | ||||||
|---|---|---|---|---|---|---|---|
| H-1 | H-2 | H-3 | H-4 | H-5 | H-6 | ||
| →3)-α- |
| 5.17 | 4.20 | 3.97 | 3.97 | 3.92 | 1.23 |
| 103.0 | 70.3 |
| 52.5 | 69.4 | 18.0 | ||
| →2)-α- |
| 5.16 | 4.15 | 4.05 | 3.91 | 3.84 | 1.19 |
| 101.7 |
| 69.2 | 54.3 | 69.6 | 18.0 | ||
| →4)-α- |
| 5.04 | 4.26 | 3.97 | 4.12 | 3.90 | 3.74, 3.81 |
| 95.0 | 50.9 | 69.2 |
| 72.7 | 62.2 | ||
| →3)-α- |
| 5.00 | 3.91 | 3.94 | 3.98 | 3.92 | 1.23 |
| 103.0 | 67.0 |
| 52.3 | 69.4 | 18.0 | ||
Chemical shifts for NAc are δH 2.05–2.06 and δC 23.3–23.4/175.6–176.0.
Figure 4Part of a 1H,13C HSQC spectrum (500 × 125 MHz) of the O-PS of A. hydrophila JCM 3968, serotype O6. The spectrum was recorded at 32 °C in D2O as a solvent. Capital letters and Arabic numerals refer to atoms in sugar residues denoted as shown in Table 2. OMe - O-methyl group of Rha4N2Me, chemical shifts for OMe are δH 3.5 and δC 60.0.
Figure 5Parts of 1H,1H NOESY and 1H NMR (insert) spectra of the O-PS of A. hydrophila JCM 3968, serotype O6. The map shows NOE contacts between anomeric protons and protons at the glycosidic linkages (underlined). Some other H/H correlations are depicted as well. Capital letters and Arabic numerals refer to atoms in the sugars denoted as shown in Table 2.
Figure 6Regions of the 1H,13C HMBC spectrum of the O-PS of A. hydrophila JCM 3968, serotype O6. The maps show heteronuclear correlations for: (a) Anomeric protons, and (b) H-6 protons. Interresidue correlations between anomeric protons and carbons at the glycosidic linkages are underlined. Some other correlations H/C are depicted as well. Capital letters and Arabic numerals refer to protons or carbons in the sugar residues denoted as shown in Table 2.