| Literature DB >> 24608968 |
Anna Turska-Szewczuk1, Katarzyna A Duda2, Dominik Schwudke3, Agnieszka Pekala4, Alicja Kozinska5, Otto Holst6.
Abstract
Chemical analyses, mass spectrometry, and NMR spectroscopy were applied to study the structure of theEntities:
Mesh:
Substances:
Year: 2014 PMID: 24608968 PMCID: PMC3967211 DOI: 10.3390/md12031298
Source DB: PubMed Journal: Mar Drugs ISSN: 1660-3397 Impact factor: 5.118
Figure 1Silver-stained SDS-Tricine PAGE of the water- and phenol-soluble LPS fractions of A. veronii strain Bs19 (lane 2, lane 3, respectively), and Salmonella enterica sv. Typhimurium as reference (lane 1). Two micrograms were loaded per lane.
Figure 2Charge-deconvoluted ESI FT-ICR mass spectra (negative ion mode) of the water- and phenol-soluble LPS fractions from A. veronii strain Bs19 (A) and (B), respectively. Indicated mass values refer to the monoisotopic signals of the neutral molecules. LPS, LPS, LPS, acylation state of the lipid A, * undefined contaminations.
Composition of the main species present in the charge deconvoluted ESI FT-ICR mass spectra (negative ion mode) of the water and phenol-soluble lipopolysaccharide (LPS) fractions of A. veronii Bs19.
| Species | Mmeasured
| Mmeasured
| Mcalculated | Composition |
|---|---|---|---|---|
| 3042.219 | 3042.214 | 3042.203 | Hep5Hex3HexN3KdoP3[14:0(3-OH)]212:0 | |
| 3268.403 | 3268.400 | 3268.397 | Hep5Hex3HexN3KdoP3[14:0(3-OH)]312:0 | |
| 3676.765 | 3676.765 | 3676.757 | Hep5Hex3HexN3KdoP3[14:0(3-OH)]4(12:0)2 | |
| 3740.498 | 3740.498 | 3740.480 | 6dHex6dHexNHep5Hex4HexN4KdoP3Ac2[14:0(3-OH)]212:0 | |
| 3966.695 | 3966.694 | 3966.671 | 6dHex6dHexNHep5Hex4HexN4KdoP3Ac2[14:0(3-OH)]312:0 | |
| 4375.077 | 4375.077 | 4375.031 | 6dHex6dHexNHep5Hex4HexN4KdoP3Ac2[14:0(3-OH)]4(12:0)2 | |
| − | 2816.290 | 2816.300 | Hep4Hex2HexN3KdoP2[14:0(3-OH)]312:0-H2O | |
| − | 2624.231 | 2624.240 | Hep3Hex2HexN3KdoP2[14:0(3-OH)]312:0-H2O |
Figure 3Charge-deconvoluted ESI FT-ICR mass spectra (negative ion mode) of the water- and phenol-soluble LPS fractions from A. veronii Bs19 with unspecific fragmentation in the collision cell (collision voltage 30 V) (A) and (B), respectively, providing the fragmentation of the labile linkage between the Kdo and lipid A. Mass numbers given refer to the monoisotopic masses of the neutral molecules.
Composition of the main Y- and B-fragments present in the charge deconvoluted ESI FT-ICR mass spectra (negative ion mode) of the water- and phenol-soluble LPS fractions from A. veronii strain Bs19 obtained with unspecific fragmentation.
| Species | Mmeasured | Mmeasured | Mcalculated | Composition |
|---|---|---|---|---|
| 1134.638 | 1134.639 | 1134.634 | HexN2P2[14:0(3-OH)]212:0 | |
| 1162.673 | 1162.672 | 1162.665 | HexN2P2[14:0(3-OH)]214:0 | |
| 1360.830 | 1360.830 | 1360.827 | HexN2P2[14:0(3-OH)]312:0 | |
| 1388.831 | 1388.832 | 1388.859 | HexN2P2[14:0(3-OH)]314:0 | |
| 1769.193 | − | 1769.188 | HexN2P2[14:0(3-OH)]4(12:0)2 | |
| 1809.599 | 1809.598 | 1809.598 | Hep5Hex3HexNKdo-2H2O | |
| 1907.588 | 1907.588 | 1907.569 | Hep5Hex3HexNKdoP-H2O | |
| 2507.880 | 2507.875 | 2507.866 | 6dHex6dHexNHep5Hex4HexN2KdoAc2-2H2O | |
| 2605.869 | 2605.876 | 2605.843 | 6dHex6dHexNHep5Hex4HexN2KdoPAc2-H2O |
Figure 41H NMR (700.43 MHz) (A) and 13C NMR (176.14 MHz) (B) spectra of the OPS from A. veronii strain Bs19. Capital letters and Arabic numerals refer to atoms in the sugar residues denoted as shown in Table 3. NAc, N-acetyl groups, spectra were recorded at 32 °C in D2O as a solvent, relative to external acetone as reference (δH 2.225, δC 31.45).
1H and 13C NMR chemical shifts of the constituents of the O-specific polysaccharides (OPS) of A. veronii strain Bs19. Spectra were recorded in D2O relative to external acetone as reference (δH 2.225, δC 31.45).
| Chemical Shifts (ppm) | |||||||
|---|---|---|---|---|---|---|---|
| Sugar Residue | H-1 | H-2 | H-3 | H-4 | H-5 | H-6 | |
| C-1 | C-2 | C-3 | C-4 | C-5 | C-6 | ||
| →3)-α- | 5.27 | 4.35 | 3.95 | 4.24 | 4.11 | 3.75 | |
| 98.11 | 49.15 | 69.72 | 72.30 | 62.30 | |||
| →3)-α- | 5.21 | 4.28 | 3.87 | 3.61 | 3.78 | 1.33 | |
| 102.46 | 68.34 | 71.21 | 70.71 | 18.00 | |||
| →4)-α- | 5.05 | 3.56 | 4.33 | 3.52 | 4.20 | 1.30 | |
| 96.03 | 71.50 | 55.09 | 68.24 | 19.00 | |||
| →4)-β- | 4.47 | 3.54 | 3.77 | 4.03 | 3.74 | 3.75 | |
| 106.02 | 71.45 | 74.17 | 76.06 | 62.30 | |||
Chemical shifts for NAc were δH 2.02 and δC 23.7/175.6 for A and δH 1.97 and δC 23.2/175.4 for C.
Figure 5Section of the 1H,13C HMBC spectrum of the OPS of A. veronii strain Bs19. Correlations between anomeric protons and carbons at the glycosidic linkages are underlined. Some other H/C correlations are also depicted (italic). Capital letters and Arabic numerals refer to atoms in the sugar residues denoted as shown in Table 3.
Figure 6(A) Part of the charge-deconvoluted ESI FT-ICR mass spectrum (negative ion mode) of the lower molecular mass fraction of the degraded PS isolated from the LPS of A. veronii Bs19, recorded with unspecific fragmentation. (B) Fragmentation scheme of the molecule. Mass numbers given refer to the monoisotopic masses. Mass fragments (marked with capital letters) are labeled according to the nomenclature of Domon and Costello [33].
Composition of the main species present in the charge deconvoluted ESI FT-ICR MS (negative ion mode) of the lower molecular mass fraction of the degraded PS isolated from the LPS of A. veronii Bs19, recorded with unspecific fragmentation. Mass fragments (marked with capital letters) are labeled according to the nomenclature of Domon and Costello [33].
| Species | Mmeasured | Mcalculated | Composition |
|---|---|---|---|
| 716.286 | 716.284 | [6dHexNAc6dHexHexHexNAc] | |
| 903.372 | 903.369 | [6dHexNAc6dHexHexHexNAc] | |
| 1049.433 | 1049.427 | [6dHexNAc6dHexHexHexNAc]6dHexNAc6dHex | |
| 1211.486 | 1211.479 | [6dHexNAc6dHexHexHexNAc]6dHexNAc6dHexHex | |
| 1414.576 | 1414.558 | [6dHexNAc6dHexHexHexNAc]2 | |
| 1601.669 | 1601.643 | [6dHexNAc6dHexHexHexNAc]26dHexNAc | |
| 1747.724 | 1747.700 | [6dHexNAc6dHexHexHexNAc]26dHexNAc6dHex | |
| 2112.830 | 2112.831 | [6dHexNAc6dHexHexHexNAc]3 | |
| 1827.612 | 1827.603 | Hep5Hex3HexNKdo-H2O | |
| 2192.748 | 2192.734 | [HexHexNAc]Hep5Hex3HexNKdo-H2O | |
| 2525.895 | 2525.876 | [6dHexNAc6dHexHexHexNAc]Hep5Hex3HexNKdo-H2O | |
| 2891.010 | 2891.007 | [6dHexNAc6dHexHex2HexNAc2]Hep5Hex3HexNKdo-H2O | |
| 3037.077 | 3037.065 | [6dHexNAc6dHex2Hex2HexNAc2]Hep5Hex3HexNKdo-H2O | |
| 3224.159 | 3224.145 | [6dHexNAc6dHexHexHexNAc]2Hep5Hex3HexNKdo-H2O |