| Literature DB >> 23595053 |
Anna Turska-Szewczuk1, Buko Lindner, Iwona Komaniecka, Alicja Kozinska, Agnieszka Pekala, Adam Choma, Otto Holst.
Abstract
Chemical analyses and mass spectrometry were used to study the structure of theEntities:
Mesh:
Substances:
Year: 2013 PMID: 23595053 PMCID: PMC3705401 DOI: 10.3390/md11041235
Source DB: PubMed Journal: Mar Drugs ISSN: 1660-3397 Impact factor: 5.118
Figure 1Silver-stained SDS-Tricine PAGE of the S- and R-type lipopolysaccharide (LPS) of A. bestiarum strain K296 (lane 2, 4 μg; lane 3, 4 μg, respectively) and Salmonella enterica sv. Typhimurium (Sigma, St. Louis, MO, USA) as reference (lane 1, 2 μg).
Figure 2Charge-deconvoluted ESI FT-ICR mass spectra (negative ion mode) of the intact R- and S-type LPS of A. bestiarum strain K296 (A) and (B), respectively. The composition of major ions is shown close to the corresponding ions. Mass numbers given refer to the monoisotopic masses. LPS, LPS, acylation state of the lipid A. LPSI, tetra-acylated lipid A; LPSI, hexa-acylated lipid A; SR-LPSII, LPS glycoform II.
Composition of the main species present in the charge-deconvoluted (negative ion mode) ESI FT-ICR mass spectra of the intact S- and R-type LPS from A. bestiarum strain K296.
| Species | Mmeasured | Mcalculated | Composition |
|---|---|---|---|
| 2910.129 | 2910.128 | Hep6HexHexN3KdoP3[14:0(3-OH)]212:0 | |
| 3136.324 | 3136.318 | Hep6HexHexN3KdoP3[14:0(3-OH)]312:0 | |
| 3136.347 | 3136.318 | ||
| 3298.378 | 3298.370 | Hep6Hex2HexN3KdoP3[14:0(3-OH)]312:0 | |
| 3298.404 | 3298.370 | ||
| 3544.677 | 3544.668 | Hep6HexHexN3KdoP3[14:0(3-OH)]412:02 | |
| 3544.708 | 3544.668 | ||
| 3675.742 | 3675.713 | Hep6HexHexN3PenNKdoP3[14:0(3-OH)]412:02 | |
| 3675.771 | 3675.713 | ||
| 3706.766 | 3706.720 | Hep6Hex2HexN3KdoP3[14:0(3-OH)]412:02 | |
| 3706.792 | 3706.720 | ||
| 3806.816 | 3806.758 | Hep6HexHexN3PenN2KdoP3[14:0(3-OH)]412:02 | |
| 3837.778 | 3837.765 | Hep6Hex2HexN3PenNKdoP3[14:0(3-OH)]412:02 | |
| 3967.862 | 3968.810 | Hep6Hex2HexN3PenN2KdoP3[14:0(3-OH)]412:02 | |
| 4082.635 | 4081.648 | 6dHex2Hep6Hex3HexN4KdoP3Ac4[14:0(3-OH)]312:0 |
Figure 3Part of the charge-deconvoluted ESI FT-ICR mass spectra (negative ion mode) of the R- and S-type LPS under unspecific fragmentation in the collision cell (collision voltage 30 V) (A) and (B), respectively, providing the fragmentation of the labile linkage between the Kdo and lipid A. Mass numbers given refer to the monoisotopic masses. Ac, an acetyl group.
Composition of the main Y and B ions present in the charge-deconvoluted (negative ion mode) ESI FT-ICR mass spectra of the S- and R-type LPS from A. bestiarum strain K296 obtained by unspecific fragmentation.
| Species | Mmeasured | Mcalculated | Composition |
|---|---|---|---|
| 1134.625 | 1134.621 | HexN2P2[14:0(3-OH)]212:0 | |
| 1360.813 | 1360.811 | HexN2P2[14:0(3-OH)]312:0 | |
| 1360.821 | |||
| 1583.451 | 1583.447 | Hep5HexHexNKdoP | |
| 1583.455 | |||
| 1769.174 | 1769.161 | HexN2P2[14:0(3-OH)]4(12:0)2 | |
| 1775.510 | 1775.507 | Hep6HexHexNKdoP | |
| 1775.522 | |||
| 1937.556 | 1937.559 | Hep6Hex2HexNKdoP | |
| 1937.568 | |||
| 2720.830 | 2720.837 | 6dHex2Hep6Hex3HexN2KdoPAc4 |
1H and 13C NMR chemical shifts of the constituents of the O-deacetylated O-specific polysaccharide (OPS) of A. bestiarum strain K296. Spectra were recorded in D2O solution relative to internal acetone as reference (δH 2.225, δC 31.07).
| Sugar residue | Chemical shifts (ppm) | ||||||
|---|---|---|---|---|---|---|---|
| H-1 C-1 | H-2 C-2 | H-3 C-3 | H-4 C-4 | H-5 C-5 | H-6 C-6 | ||
| →3,4)-α-d-Man | 5.10 | 4.23 | 4.09 | 3.84 | 3.99 | 3.73–3.84 | |
| 98.6 | 67.4 | 71.9 | 61.2 | ||||
| α-l-6dTal | 5.06 | 3.87 | 4.10 | 3.78 | 4.71 | 1.29 | |
| 97.6 | 70.9 | 66.3 | 73.4 | 68.2 | 16.3 | ||
| →3)-α-l-6dTal | 5.01 | 3.90 | 4.03 | 3.87 | 4.15 | 1.24 | |
| 104.0 | 68.0 | 72.2 | 68.8 | 16.3 | |||
| →3)-β-d-Gal | 4.49 | 4.02 | 3.75 | 3.95 | 3.60 | 3.72–3.77 | |
| 101.6 | 52.5 | 68.4 | 75.8 | 62.3 | |||
Chemical shifts for NAc are δH 2.05 and δC 23.0/175.5 (D).
Figure 4Part of a 1H-1H TOCSY spectrum of the O-deacetylated (A) and the initial OPS (B) of A. bestiarum strain K296, respectively. The maps show the spin systems of the repeating unit. Capital letters and Arabic numerals refer to atoms in the sugar residues, denoted as shown in Table 3 or in Table 4 for the O-deacetylated and the initial OPSs, respectively.
1H and 13C NMR chemical shifts of the initial OPS of A. bestiarum strain K296.
| Sugar residue | Chemical shifts (ppm) | ||||||
|---|---|---|---|---|---|---|---|
| H-1 C-1 | H-2 C-2 | H-3 C-3 | H-4 C-4 | H-5 C-5 | H-6 C-6 | ||
| α- | 5.23 | 4.25 | 5.01 | 3.84 | 3.98 | 1.23 | |
| ND | 65.6 | 66.0 | 70.6 | 67.3 | 16.2 | ||
| α- | 5.16 | 5.25 | 4.42 | 5.05 | 3.99 | 1.23 | |
| 96.7 | 71.4 | 64.6 | 70.5 | 67.3 | 16.2 | ||
| α- | 5.08 | 5.21 | 4.35 | 5.07 | 4.03 | 1.23 | |
| 96.5 | 69.0 | 64.7 | 68.2 | 67.4 | 16.2 | ||
| →3,4)-α- | 5.06 | 4.19 | 4.00 | 3.75 | 4.02 | 3.76 | |
| 98.7 | 68.3 | 71.4 | 61.8 | ||||
| →3)-α- | 4.98 | 5.10 | 4.21 | 3.85 | 4.16 | 1.23 | |
| 101.3 | 68.2 | 70.6 | 68.4 | 16.2 | |||
| →3)-β-D-Gal | 4.49 | 4.04 | 3.72 | 3.92 | 3.58 | 3.74 | |
| 101.4 | 52.6 | 68.4 | 76.0 | 62.4 | |||
Chemical shifts for NAc are δH 2.04 and δC 23.0/175.6 (D′) and for OAc δH 2.15 and δC 21.2/174.2 (C′); δH 2.19–2.2 and δC 21.3/174.3–175.2 (B′); δH 2.19–2.2 and δC 21.3/174.3–175.1 (B″ and B′″); ND, not determined.
Figure 5Part of a 1H-1H NOESY spectrum of the O-deacetylated OPS of A. bestiarum strain K296. The map shows NOE contacts between anomeric protons and protons at the glycosidic linkages (underlined). Some other H/H correlations are also depicted. Capital letters and Arabic numerals refer to atoms in the sugars, denoted as shown in Table 3.
Figure 6Part of 1H NMR spectra of the initial (A) and the O-deacetylated OPSs (B). Integrals are normalized for GalpNAc H-1 signal.
Scheme 1Structure of the OPS from the A. bestiarum strain K296.
Figure 7SDS-PAGE (A) and Western blots of the LPS preparations with anti-A. hydrophila AH-3 O:34 (B) and anti-A. bestiarum K296 O:18 sera (C), respectively. Native LPSs of A. bestiarum K296 (lane 3 and 8) and A. hydrophila AH-3 (lane 5 and 6); partially O-deacylated LPSs of A. bestiarum K296 (lane 4 and 7) and A. hydrophila AH-3 (lane 2 and 9). LPS of S. enterica sv. Typhimurium (lane 1 and 10). Approximately 3 μg of LPS was loaded per lane.