Literature DB >> 31017595

Chemical composition of DNA-encoded libraries, past present and future.

Paige Dickson1, Thomas Kodadek.   

Abstract

DNA-encoded libraries represent an exciting and powerful modality for high-throughput screening. In this article, we highlight recent important advances in this field and also suggest some important directions that would make the technology even more powerful.

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Year:  2019        PMID: 31017595      PMCID: PMC6520149          DOI: 10.1039/c9ob00581a

Source DB:  PubMed          Journal:  Org Biomol Chem        ISSN: 1477-0520            Impact factor:   3.876


  76 in total

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Journal:  Chem Rev       Date:  1997-04-01       Impact factor: 60.622

2.  Asymmetric organocatalytic Henry reaction.

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Review 3.  The flexizyme system: a highly flexible tRNA aminoacylation tool for the translation apparatus.

Authors:  Masaki Ohuchi; Hiroshi Murakami; Hiroaki Suga
Journal:  Curr Opin Chem Biol       Date:  2007-09-19       Impact factor: 8.822

4.  RNA-peptide fusions for the in vitro selection of peptides and proteins.

Authors:  R W Roberts; J W Szostak
Journal:  Proc Natl Acad Sci U S A       Date:  1997-11-11       Impact factor: 11.205

5.  DNA-Compatible [3 + 2] Nitrone-Olefin Cycloaddition Suitable for DEL Syntheses.

Authors:  Christopher J Gerry; Zhenhua Yang; Michele Stasi; Stuart L Schreiber
Journal:  Org Lett       Date:  2019-02-14       Impact factor: 6.005

6.  In vitro selection of a DNA-templated small-molecule library reveals a class of macrocyclic kinase inhibitors.

Authors:  Ralph E Kleiner; Christoph E Dumelin; Gerald C Tiu; Kaori Sakurai; David R Liu
Journal:  J Am Chem Soc       Date:  2010-08-25       Impact factor: 15.419

7.  A DNA-Encoded Library of Chemical Compounds Based on Common Scaffolding Structures Reveals the Impact of Ligand Geometry on Protein Recognition.

Authors:  Nicholas Favalli; Stefan Biendl; Marco Hartmann; Jacopo Piazzi; Filippo Sladojevich; Susanne Gräslund; Peter J Brown; Katja Näreoja; Herwig Schüler; Jörg Scheuermann; Raphael Franzini; Dario Neri
Journal:  ChemMedChem       Date:  2018-06-01       Impact factor: 3.466

8.  A biomimetic polyketide-inspired approach to small-molecule ligand discovery.

Authors:  Claudio Aquino; Mohosin Sarkar; Michael J Chalmers; Kimberly Mendes; Thomas Kodadek; Glenn C Micalizio
Journal:  Nat Chem       Date:  2011-11-20       Impact factor: 24.427

9.  Versatile protein recognition by the encoded display of multiple chemical elements on a constant macrocyclic scaffold.

Authors:  Yizhou Li; Roberto De Luca; Samuele Cazzamalli; Francesca Pretto; Davor Bajic; Jörg Scheuermann; Dario Neri
Journal:  Nat Chem       Date:  2018-03-19       Impact factor: 24.427

10.  Utility of redundant combinatorial libraries in distinguishing high and low quality screening hits.

Authors:  Todd M Doran; Yu Gao; Kimberly Mendes; Sonja Dean; Scott Simanski; Thomas Kodadek
Journal:  ACS Comb Sci       Date:  2014-04-21       Impact factor: 3.784

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  16 in total

1.  A Solution Phase Platform to Characterize Chemical Reaction Compatibility with DNA-Encoded Chemical Library Synthesis.

Authors:  Anokha S Ratnayake; Mark E Flanagan; Timothy L Foley; Justin D Smith; Jillian G Johnson; Justin Bellenger; Justin I Montgomery; Brian M Paegel
Journal:  ACS Comb Sci       Date:  2019-09-06       Impact factor: 3.784

Review 2.  On-resin multicomponent protocols for biopolymer assembly and derivatization.

Authors:  Daniel G Rivera; Manuel G Ricardo; Aldrin V Vasco; Ludger A Wessjohann; Erik V Van der Eycken
Journal:  Nat Protoc       Date:  2021-01-20       Impact factor: 13.491

Review 3.  DNA-Encoded Chemical Libraries: A Comprehensive Review with Succesful Stories and Future Challenges.

Authors:  Adrián Gironda-Martínez; Etienne J Donckele; Florent Samain; Dario Neri
Journal:  ACS Pharmacol Transl Sci       Date:  2021-06-14

Review 4.  Strategies for developing DNA-encoded libraries beyond binding assays.

Authors:  Yiran Huang; Yizhou Li; Xiaoyu Li
Journal:  Nat Chem       Date:  2022-02-04       Impact factor: 24.274

5.  Multifunctional Building Blocks Compatible with Photoredox-Mediated Alkylation for DNA-Encoded Library Synthesis.

Authors:  Shorouk O Badir; Jaehoon Sim; Katelyn Billings; Adam Csakai; Xuange Zhang; Weizhe Dong; Gary A Molander
Journal:  Org Lett       Date:  2020-01-15       Impact factor: 6.005

6.  Solid-phase synthesis of DNA-encoded libraries via an "aldehyde explosion" strategy.

Authors:  Nicholas G Paciaroni; John M Ndungu; Thomas Kodadek
Journal:  Chem Commun (Camb)       Date:  2020-03-26       Impact factor: 6.222

7.  High-Throughput Quality Control Assay for the Solid-Phase Synthesis of DNA-Encoded Libraries of Macrocycles*.

Authors:  Animesh Roy; Eric Koesema; Thomas Kodadek
Journal:  Angew Chem Int Ed Engl       Date:  2021-04-13       Impact factor: 15.336

8.  Selection of DNA-encoded chemical libraries against endogenous membrane proteins on live cells.

Authors:  Yiran Huang; Ling Meng; Qigui Nie; Yu Zhou; Langdong Chen; Shilian Yang; Yi Man Eva Fung; Xiaomeng Li; Cen Huang; Yan Cao; Yizhou Li; Xiaoyu Li
Journal:  Nat Chem       Date:  2020-12-21       Impact factor: 24.427

9.  Homogeneous and Functional Group Tolerant Ring-Closing Metathesis for DNA-Encoded Chemical Libraries.

Authors:  Olivier B C Monty; Pranavanand Nyshadham; Kurt M Bohren; Murugesan Palaniappan; Martin M Matzuk; Damian W Young; Nicholas Simmons
Journal:  ACS Comb Sci       Date:  2020-01-21       Impact factor: 3.784

10.  Solution-Phase DNA-Compatible Pictet-Spengler Reaction Aided by Machine Learning Building Block Filtering.

Authors:  Ke Li; Xiaohong Liu; Sixiu Liu; Yulong An; Yanfang Shen; Qingxia Sun; Xiaodong Shi; Wenji Su; Weiren Cui; Zhiqiang Duan; Letian Kuai; Hongfang Yang; Alexander L Satz; Kaixian Chen; Hualiang Jiang; Mingyue Zheng; Xuanjia Peng; Xiaojie Lu
Journal:  iScience       Date:  2020-05-07
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