Literature DB >> 30950394

Narrow equilibrium window for complex coacervation of tau and RNA under cellular conditions.

Yanxian Lin1, James McCarty2, Jennifer N Rauch3,4, Kris T Delaney5, Kenneth S Kosik3,4, Glenn H Fredrickson5,6, Joan-Emma Shea2,7, Songi Han2,6.   

Abstract

The mechanism that leads to liquid-liquid phase separation (LLPS) of the tau protein, whose pathological aggregation is implicated in neurodegenerative disorders, is not well understood. Establishing a phase diagram that delineates the boundaries of phase co-existence is key to understanding whether LLPS is an equilibrium or intermediate state. We demonstrate that tau and RNA reversibly form complex coacervates. While the equilibrium phase diagram can be fit to an analytical theory, a more advanced model is investigated through field theoretic simulations (FTS) that provided direct insight into the thermodynamic driving forces of tau LLPS. Together, experiment and simulation reveal that tau-RNA LLPS is stable within a narrow equilibrium window near physiological conditions over experimentally tunable parameters including temperature, salt and tau concentrations, and is entropy-driven. Guided by our phase diagram, we show that tau can be driven toward LLPS under live cell coculturing conditions with rationally chosen experimental parameters.
© 2019, Lin et al.

Entities:  

Keywords:  Alzheimer's disease; complex coacervation; computational biology; field-theoretic simulations; liquid-liquid phase separation; neuroscience; none; phase diagram; protein droplet; systems biology; tau; tauopathies

Mesh:

Substances:

Year:  2019        PMID: 30950394      PMCID: PMC6450672          DOI: 10.7554/eLife.42571

Source DB:  PubMed          Journal:  Elife        ISSN: 2050-084X            Impact factor:   8.140


  66 in total

1.  A multi-species exchange model for fully fluctuating polymer field theory simulations.

Authors:  Dominik Düchs; Kris T Delaney; Glenn H Fredrickson
Journal:  J Chem Phys       Date:  2014-11-07       Impact factor: 3.488

Review 2.  Liquid-liquid phase separation in biology.

Authors:  Anthony A Hyman; Christoph A Weber; Frank Jülicher
Journal:  Annu Rev Cell Dev Biol       Date:  2014       Impact factor: 13.827

3.  Thermal stabilities of globular proteins.

Authors:  K A Dill; D O Alonso; K Hutchinson
Journal:  Biochemistry       Date:  1989-06-27       Impact factor: 3.162

4.  TAR DNA-binding protein 43 (TDP-43) liquid-liquid phase separation is mediated by just a few aromatic residues.

Authors:  Hao-Ru Li; Wan-Chin Chiang; Po-Chun Chou; Won-Jing Wang; Jie-Rong Huang
Journal:  J Biol Chem       Date:  2018-03-06       Impact factor: 5.157

5.  Electrostatic free energy of weakly charged macromolecules in solution and intermacromolecular complexes consisting of oppositely charged polymers.

Authors:  P Maarten Biesheuvel; Martien A Cohen Stuart
Journal:  Langmuir       Date:  2004-03-30       Impact factor: 3.882

6.  Role of water in protein aggregation and amyloid polymorphism.

Authors:  D Thirumalai; Govardhan Reddy; John E Straub
Journal:  Acc Chem Res       Date:  2011-07-15       Impact factor: 22.384

7.  Domains of tau protein and interactions with microtubules.

Authors:  N Gustke; B Trinczek; J Biernat; E M Mandelkow; E Mandelkow
Journal:  Biochemistry       Date:  1994-08-16       Impact factor: 3.162

8.  Pressure-Dependent Properties of Elementary Hydrophobic Interactions: Ramifications for Activation Properties of Protein Folding.

Authors:  Cristiano L Dias; Hue Sun Chan
Journal:  J Phys Chem B       Date:  2014-06-30       Impact factor: 2.991

9.  Structural and hydrodynamic properties of an intrinsically disordered region of a germ cell-specific protein on phase separation.

Authors:  Jacob P Brady; Patrick J Farber; Ashok Sekhar; Yi-Hsuan Lin; Rui Huang; Alaji Bah; Timothy J Nott; Hue Sun Chan; Andrew J Baldwin; Julie D Forman-Kay; Lewis E Kay
Journal:  Proc Natl Acad Sci U S A       Date:  2017-09-11       Impact factor: 11.205

10.  RNA stores tau reversibly in complex coacervates.

Authors:  Xuemei Zhang; Yanxian Lin; Neil A Eschmann; Hongjun Zhou; Jennifer N Rauch; Israel Hernandez; Elmer Guzman; Kenneth S Kosik; Songi Han
Journal:  PLoS Biol       Date:  2017-07-06       Impact factor: 8.029

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  36 in total

1.  Driving tau into phase-separated liquid droplets.

Authors:  Martin Margittai
Journal:  J Biol Chem       Date:  2019-07-19       Impact factor: 5.157

2.  Comparative roles of charge, π, and hydrophobic interactions in sequence-dependent phase separation of intrinsically disordered proteins.

Authors:  Suman Das; Yi-Hsuan Lin; Robert M Vernon; Julie D Forman-Kay; Hue Sun Chan
Journal:  Proc Natl Acad Sci U S A       Date:  2020-11-02       Impact factor: 11.205

Review 3.  The structure and phase of tau: from monomer to amyloid filament.

Authors:  Yifan Zeng; Jing Yang; Bailing Zhang; Meng Gao; Zhengding Su; Yongqi Huang
Journal:  Cell Mol Life Sci       Date:  2020-10-19       Impact factor: 9.261

Review 4.  Biomolecular Phase Separation: From Molecular Driving Forces to Macroscopic Properties.

Authors:  Gregory L Dignon; Robert B Best; Jeetain Mittal
Journal:  Annu Rev Phys Chem       Date:  2020-04-20       Impact factor: 12.703

5.  Interplay between Short-Range Attraction and Long-Range Repulsion Controls Reentrant Liquid Condensation of Ribonucleoprotein-RNA Complexes.

Authors:  Ibraheem Alshareedah; Taranpreet Kaur; Jason Ngo; Hannah Seppala; Liz-Audrey Djomnang Kounatse; Wei Wang; Mahdi Muhammad Moosa; Priya R Banerjee
Journal:  J Am Chem Soc       Date:  2019-09-05       Impact factor: 15.419

Review 6.  Tau-mediated dysregulation of RNA: Evidence for a common molecular mechanism of toxicity in frontotemporal dementia and other tauopathies.

Authors:  Shon A Koren; Sara Galvis-Escobar; Jose F Abisambra
Journal:  Neurobiol Dis       Date:  2020-05-12       Impact factor: 5.996

Review 7.  Amyloid Oligomers: A Joint Experimental/Computational Perspective on Alzheimer's Disease, Parkinson's Disease, Type II Diabetes, and Amyotrophic Lateral Sclerosis.

Authors:  Phuong H Nguyen; Ayyalusamy Ramamoorthy; Bikash R Sahoo; Jie Zheng; Peter Faller; John E Straub; Laura Dominguez; Joan-Emma Shea; Nikolay V Dokholyan; Alfonso De Simone; Buyong Ma; Ruth Nussinov; Saeed Najafi; Son Tung Ngo; Antoine Loquet; Mara Chiricotto; Pritam Ganguly; James McCarty; Mai Suan Li; Carol Hall; Yiming Wang; Yifat Miller; Simone Melchionna; Birgit Habenstein; Stepan Timr; Jiaxing Chen; Brianna Hnath; Birgit Strodel; Rakez Kayed; Sylvain Lesné; Guanghong Wei; Fabio Sterpone; Andrew J Doig; Philippe Derreumaux
Journal:  Chem Rev       Date:  2021-02-05       Impact factor: 60.622

Review 8.  Physics-based computational and theoretical approaches to intrinsically disordered proteins.

Authors:  Joan-Emma Shea; Robert B Best; Jeetain Mittal
Journal:  Curr Opin Struct Biol       Date:  2021-02-02       Impact factor: 6.809

9.  Liquid-Liquid Phase Separation of Tau Driven by Hydrophobic Interaction Facilitates Fibrillization of Tau.

Authors:  Yanxian Lin; Yann Fichou; Andrew P Longhini; Luana C Llanes; Pengyi Yin; Guillermo C Bazan; Kenneth S Kosik; Songi Han
Journal:  J Mol Biol       Date:  2020-12-03       Impact factor: 5.469

10.  Thermodynamics and kinetics of phase separation of protein-RNA mixtures by a minimal model.

Authors:  Jerelle A Joseph; Jorge R Espinosa; Ignacio Sanchez-Burgos; Adiran Garaizar; Daan Frenkel; Rosana Collepardo-Guevara
Journal:  Biophys J       Date:  2021-02-09       Impact factor: 4.033

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