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Literature DB >> 28527343

Engineering genetically-encoded tools for optogenetic control of protein activity.

Abstract

Optogenetic tools offer fast and reversible control of protein activity with subcellular spatial precision. In the past few years, remarkable progress has been made in engineering photoactivatable systems regulating the activity of cellular proteins. In this review, we discuss general strategies in designing and optimizing such optogenetic tools and highlight recent advances in the field, with specific focus on applications regulating protein catalytic activity.

Entities: Chemical Disease Gene Species

Mesh：

Substances：
Proteins

Year: 2017 PMID： 28527343 PMCID： PMC5693790 DOI： 10.1016/j.cbpa.2017.05.001

Source DB: PubMed Journal: Curr Opin Chem Biol ISSN： 1367-5931 Impact factor: 8.822

55 in total

1. Regulation of neural gene transcription by optogenetic inhibition of the RE1-silencing transcription factor.

Authors: Francesco Paonessa; Stefania Criscuolo; Silvio Sacchetti; Davide Amoroso; Helena Scarongella; Federico Pecoraro Bisogni; Emanuele Carminati; Giacomo Pruzzo; Luca Maragliano; Fabrizia Cesca; Fabio Benfenati
Journal: Proc Natl Acad Sci U S A Date: 2015-12-23 Impact factor: 11.205

2. A split-Cas9 architecture for inducible genome editing and transcription modulation.

Authors: Bernd Zetsche; Sara E Volz; Feng Zhang
Journal: Nat Biotechnol Date: 2015-02 Impact factor: 54.908

Review 3. Nanobodies: natural single-domain antibodies.

Authors: Serge Muyldermans
Journal: Annu Rev Biochem Date: 2013-03-13 Impact factor: 23.643

4. Structural basis of a phototropin light switch.

Authors: Shannon M Harper; Lori C Neil; Kevin H Gardner
Journal: Science Date: 2003-09-12 Impact factor: 47.728

5. Tuning the Binding Affinities and Reversion Kinetics of a Light Inducible Dimer Allows Control of Transmembrane Protein Localization.

Authors: Seth P Zimmerman; Ryan A Hallett; Ashley M Bourke; James E Bear; Matthew J Kennedy; Brian Kuhlman
Journal: Biochemistry Date: 2016-09-08 Impact factor: 3.162

6. Surface sites for engineering allosteric control in proteins.

Authors: Jeeyeon Lee; Madhusudan Natarajan; Vishal C Nashine; Michael Socolich; Tina Vo; William P Russ; Stephen J Benkovic; Rama Ranganathan
Journal: Science Date: 2008-10-17 Impact factor: 47.728

7. Engineering of a red-light-activated human cAMP/cGMP-specific phosphodiesterase.

Authors: Carlos Gasser; Sandra Taiber; Chen-Min Yeh; Charlotte Helene Wittig; Peter Hegemann; Soojin Ryu; Frank Wunder; Andreas Möglich
Journal: Proc Natl Acad Sci U S A Date: 2014-06-02 Impact factor: 11.205

8. Rapid blue-light-mediated induction of protein interactions in living cells.

Authors: Matthew J Kennedy; Robert M Hughes; Leslie A Peteya; Joel W Schwartz; Michael D Ehlers; Chandra L Tucker
Journal: Nat Methods Date: 2010-10-31 Impact factor: 28.547

9. Blue light-induced LOV domain dimerization enhances the affinity of Aureochrome 1a for its target DNA sequence.

Authors: Udo Heintz; Ilme Schlichting
Journal: Elife Date: 2016-01-12 Impact factor: 8.140

10. A genetically encoded photoactivatable Rac controls the motility of living cells.

Authors: Yi I Wu; Daniel Frey; Oana I Lungu; Angelika Jaehrig; Ilme Schlichting; Brian Kuhlman; Klaus M Hahn
Journal: Nature Date: 2009-08-19 Impact factor: 49.962

18 in total

1. Engineering Improved Photoswitches for the Control of Nucleocytoplasmic Distribution.

Authors: Andrew M Lerner; Hayretin Yumerefendi; Odessa J Goudy; Brian D Strahl; Brian Kuhlman
Journal: ACS Synth Biol Date: 2018-11-29 Impact factor: 5.110

2. Physical Plasma Membrane Perturbation Using Subcellular Optogenetics Drives Integrin-Activated Cell Migration.

Authors: Xenia Meshik; Patrick R O'Neill; N Gautam
Journal: ACS Synth Biol Date: 2019-02-22 Impact factor: 5.110

Review 3. Controlling protein conformation with light.

Authors: Onur Dagliyan; Klaus M Hahn
Journal: Curr Opin Struct Biol Date: 2019-03-05 Impact factor: 6.809

Review 4. Blue-Light Receptors for Optogenetics.

Authors: Aba Losi; Kevin H Gardner; Andreas Möglich
Journal: Chem Rev Date: 2018-07-09 Impact factor: 60.622

5. Advances in optogenetic regulation of gene expression in mammalian cells using cryptochrome 2 (CRY2).

Authors: Carmen N Hernández-Candia; Christina L Wysoczynski; Chandra L Tucker
Journal: Methods Date: 2019-03-21 Impact factor: 3.608

Review 6. Optophysiology: Illuminating cell physiology with optogenetics.

Authors: Peng Tan; Lian He; Yun Huang; Yubin Zhou
Journal: Physiol Rev Date: 2022-01-24 Impact factor: 37.312

7. Multiplexed Photoactivation of mRNA with Single-Cell Resolution.

Authors: Dongyang Zhang; Shuaijiang Jin; Xijun Piao; Neal K Devaraj
Journal: ACS Chem Biol Date: 2020-06-12 Impact factor: 5.100

8. Photocleavable proteins that undergo fast and efficient dissociation.

Authors: Xiaocen Lu; Yurong Wen; Shuce Zhang; Wei Zhang; Yilun Chen; Yi Shen; M Joanne Lemieux; Robert E Campbell
Journal: Chem Sci Date: 2021-05-31 Impact factor: 9.825

9. Using optogenetics to link myosin patterns to contractile cell behaviors during convergent extension.

Authors: R Marisol Herrera-Perez; Christian Cupo; Cole Allan; Annie Lin; Karen E Kasza
Journal: Biophys J Date: 2021-07-20 Impact factor: 3.699

10. Computational design of chemogenetic and optogenetic split proteins.

Authors: Onur Dagliyan; Andrey Krokhotin; Irem Ozkan-Dagliyan; Alexander Deiters; Channing J Der; Klaus M Hahn; Nikolay V Dokholyan
Journal: Nat Commun Date: 2018-10-02 Impact factor: 14.919