Literature DB >> 35072525

Optophysiology: Illuminating cell physiology with optogenetics.

Peng Tan1,2, Lian He1, Yun Huang3,4, Yubin Zhou1,4.   

Abstract

Optogenetics combines light and genetics to enable precise control of living cells, tissues, and organisms with tailored functions. Optogenetics has the advantages of noninvasiveness, rapid responsiveness, tunable reversibility, and superior spatiotemporal resolution. Following the initial discovery of microbial opsins as light-actuated ion channels, a plethora of naturally occurring or engineered photoreceptors or photosensitive domains that respond to light at varying wavelengths has ushered in the next chapter of optogenetics. Through protein engineering and synthetic biology approaches, genetically encoded photoswitches can be modularly engineered into protein scaffolds or host cells to control a myriad of biological processes, as well as to enable behavioral control and disease intervention in vivo. Here, we summarize these optogenetic tools on the basis of their fundamental photochemical properties to better inform the chemical basis and design principles. We also highlight exemplary applications of opsin-free optogenetics in dissecting cellular physiology (designated "optophysiology") and describe the current progress, as well as future trends, in wireless optogenetics, which enables remote interrogation of physiological processes with minimal invasiveness. This review is anticipated to spark novel thoughts on engineering next-generation optogenetic tools and devices that promise to accelerate both basic and translational studies.

Entities:  

Keywords:  cellular physiology; nanophotonics; optogenetics; signal transduction; synthetic biology

Mesh:

Substances:

Year:  2022        PMID: 35072525      PMCID: PMC8993538          DOI: 10.1152/physrev.00021.2021

Source DB:  PubMed          Journal:  Physiol Rev        ISSN: 0031-9333            Impact factor:   37.312


  428 in total

1.  Overlapping recognition determinants within the ssrA degradation tag allow modulation of proteolysis.

Authors:  J M Flynn; I Levchenko; M Seidel; S H Wickner; R T Sauer; T A Baker
Journal:  Proc Natl Acad Sci U S A       Date:  2001-09-04       Impact factor: 11.205

2.  A photoswitchable DNA-binding protein based on a truncated GCN4-photoactive yellow protein chimera.

Authors:  Stacy-Anne Morgan; G Andrew Woolley
Journal:  Photochem Photobiol Sci       Date:  2010-09-13       Impact factor: 3.982

3.  Fast manipulation of cellular cAMP level by light in vivo.

Authors:  Saskia Schröder-Lang; Martin Schwärzel; Reinhard Seifert; Timo Strünker; Suneel Kateriya; Jens Looser; Masakatsu Watanabe; U Benjamin Kaupp; Peter Hegemann; Georg Nagel
Journal:  Nat Methods       Date:  2006-11-26       Impact factor: 28.547

4.  Mechanisms of Cryptochrome-Mediated Photoresponses in Plants.

Authors:  Qin Wang; Chentao Lin
Journal:  Annu Rev Plant Biol       Date:  2020-03-13       Impact factor: 26.379

5.  Two distinct domains of the UVR8 photoreceptor interact with COP1 to initiate UV-B signaling in Arabidopsis.

Authors:  Ruohe Yin; Adriana B Arongaus; Melanie Binkert; Roman Ulm
Journal:  Plant Cell       Date:  2015-01-27       Impact factor: 11.277

Review 6.  Necroptosis in development, inflammation and disease.

Authors:  Ricardo Weinlich; Andrew Oberst; Helen M Beere; Douglas R Green
Journal:  Nat Rev Mol Cell Biol       Date:  2016-12-21       Impact factor: 94.444

7.  Structural and mechanistic insights into STIM1-mediated initiation of store-operated calcium entry.

Authors:  Peter B Stathopulos; Le Zheng; Guang-Yao Li; Michael J Plevin; Mitsuhiko Ikura
Journal:  Cell       Date:  2008-10-03       Impact factor: 41.582

8.  Mechanism-based tuning of a LOV domain photoreceptor.

Authors:  Brian D Zoltowski; Brian Vaccaro; Brian R Crane
Journal:  Nat Chem Biol       Date:  2009-08-30       Impact factor: 15.040

9.  Optical Control of Peroxisomal Trafficking.

Authors:  Jessica I Spiltoir; Devin Strickland; Michael Glotzer; Chandra L Tucker
Journal:  ACS Synth Biol       Date:  2015-11-02       Impact factor: 5.110

10.  Blue light-induced LOV domain dimerization enhances the affinity of Aureochrome 1a for its target DNA sequence.

Authors:  Udo Heintz; Ilme Schlichting
Journal:  Elife       Date:  2016-01-12       Impact factor: 8.140

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  7 in total

Review 1.  Rhodopsins: An Excitingly Versatile Protein Species for Research, Development and Creative Engineering.

Authors:  Willem J de Grip; Srividya Ganapathy
Journal:  Front Chem       Date:  2022-06-22       Impact factor: 5.545

2.  Red-shifted optogenetics comes to the spotlight.

Authors:  Tianlu Wang; Siyao Liu; Yun Huang; Yubin Zhou
Journal:  Clin Transl Med       Date:  2022-04

3.  LITOS: a versatile LED illumination tool for optogenetic stimulation.

Authors:  Thomas Christoph Höhener; Alex Erich Landolt; Coralie Dessauges; Lucien Hinderling; Paolo Armando Gagliardi; Olivier Pertz
Journal:  Sci Rep       Date:  2022-07-30       Impact factor: 4.996

Review 4.  Mechanisms of Regulation in Intraflagellar Transport.

Authors:  Wouter Mul; Aniruddha Mitra; Erwin J G Peterman
Journal:  Cells       Date:  2022-09-02       Impact factor: 7.666

Review 5.  The Development and Application of Opto-Chemical Tools in the Zebrafish.

Authors:  Zhiping Feng; Bertrand Ducos; Pierluigi Scerbo; Isabelle Aujard; Ludovic Jullien; David Bensimon
Journal:  Molecules       Date:  2022-09-22       Impact factor: 4.927

Review 6.  Applications and challenges of rhodopsin-based optogenetics in biomedicine.

Authors:  Hanci Zhang; Hui Fang; Deqiang Liu; Yiming Zhang; Joseph Adu-Amankwaah; Jinxiang Yuan; Rubin Tan; Jianping Zhu
Journal:  Front Neurosci       Date:  2022-09-23       Impact factor: 5.152

7.  Optical control of protein delivery and partitioning in the nucleolus.

Authors:  Peng Tan; Tingting Hong; Xiaoli Cai; Wenbo Li; Yun Huang; Lian He; Yubin Zhou
Journal:  Nucleic Acids Res       Date:  2022-07-08       Impact factor: 19.160

  7 in total

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