| Literature DB >> 30837609 |
Hailong Huang1, Liangpu Xu2, Meihuan Chen1, Na Lin1, Huili Xue1, Lingji Chen1, Yan Wang1, Deqin He1, Min Zhang1, Yuan Lin1.
Abstract
Thalassemia and hemoglobinopathy are two common inherited disorders, which are highly prevalent in southern China. However, there is little knowledge on the genotypes of thalassemia and hemoglobinopathy in Southeastern China. In this study, we present a large-scale genetic detection and molecular characterization of thalassemia and hemoglobinopathy in Fujian province, Southeastern China. A total of 189414 subjects screened for thalassemia were recruited, and the hemoglobin components and levels were investigated. Furthermore, suspected common thalassemia was identified, and the suspected rare forms of common thalassemias and hemoglobinopathy were detected. Among the total subjects screened, the overall prevalence of thalassemia and hemoglobinopathy was 6.8% and 0.26%, and rare α-thalassemia genotypes HKαα, -THAI/αα and -α27.6/αα, and novel β-thalassemia gene mutations CD90(G → T) and IVS-I-110(G > A) were identified. Additionally, Hb Q-Thailand hemoglobinopathy and five other types of hemoglobinopathies (Hb New York, Hb J-Bangkok, Hb G-Taipei, Hb G-Coushatta and Hb Maputo) were found. The results of this 10-year large-scale study demonstrate high prevalence of thalassemia with complicated gene mutations in Southeastern China, which provides valuable baseline data for genetic counseling and prenatal diagnosis. In addition to detection of common thalassemia genes, detection of rare thalassemia genotypes and hemoglobinopathies is recommended.Entities:
Mesh:
Substances:
Year: 2019 PMID: 30837609 PMCID: PMC6400947 DOI: 10.1038/s41598-019-40089-5
Source DB: PubMed Journal: Sci Rep ISSN: 2045-2322 Impact factor: 4.379
Prevalence of thalassemia and hemoglobinopathy in Fujian province, Southeastern China.
| Disorder | No. patients detected | Constituent ratio (%) | Prevalence (%) |
|---|---|---|---|
| α-thalassemia | 9173 | 68.46 | 4.84 |
| β-thalassemia | 3542 | 26.43 | 1.87 |
| Concurrent α- and β-thalassemias | 186 | 1.39 | 0.1 |
| Hemoglobinopathy | 499 | 3.72 | 0.26 |
| Total | 13400 | 100 | 7.07 |
Genotyping of α-thalassemia in Fujian province, Southeastern China.
| Genotype | Phenotype | No. patients detected | Constituent ratio (%) | |
|---|---|---|---|---|
| Common α-thalassemia | −α3.7/αα | α+/α | 1687 | 18.39 |
| −α4.2/αα | α+/α | 408 | 4.45 | |
| –SEA/αα | α0/α | 6085 | 66.34 | |
| αCSα/αα | α+/α | 106 | 1.16 | |
| αQSα/αα | α+/α | 245 | 2.67 | |
| αWSα/αα | α+/α | 106 | 1.16 | |
| –SEA/-α3.7 | α0/α+ | 139 | 1.52 | |
| –SEA/-α4.2 | α0/α+ | 56 | 0.61 | |
| αCSα/–SEA | α+/α0 | 22 | 0.24 | |
| αWSα/–SEA | α+/α0 | 7 | 0.08 | |
| αQSα/–SEA | α+/α0 | 13 | 0.14 | |
| −α3.7/−α4.2 | α+/α+ | 10 | 0.11 | |
| −α4.2/−α4.2 | α+/α+ | 10 | 0.11 | |
| −α3.7/−α3.7 | α+/α+ | 30 | 0.33 | |
| αCSα/−α4.2 | α+/α+ | 2 | 0.02 | |
| αCSα/−α3.7 | α+/α+ | 5 | 0.05 | |
| αQSα/αQSα | α+/α+ | 2 | 0.02 | |
| αQSα/−α3.7 | α+/α+ | 6 | 0.06 | |
| αQSα/−α4.2 | α+/α+ | 3 | 0.03 | |
| αWSα/−α4.2 | α+/α+ | 2 | 0.02 | |
| αWSα/−α3.7 | α+/α+ | 5 | 0.05 | |
| Subtotal | — | 8949 | 97.56 | |
| Rare α-thalassemia | HKαα/αα | α+/α | 89 | 0.97 |
| HKαα/–SEA | α+/α0 | 7 | 0.08 | |
| HKαα/−α3.7 | α+/α+ | 18 | 0.20 | |
| –SEA/−α27.6 | α0/α+ | 3 | 0.03 | |
| −α27.6/αα | α+/α | 5 | 0.05 | |
| –THAI/αα | α0/α | 97 | 1.06 | |
| −α3.7/–THAI | α+/α0 | 2 | 0.02 | |
| −α3.7/anti4.2 | α+/α+ | 3 | 0.03 | |
| Subtotal | — | 224 | 2.44 | |
| Total | — | 9173 | 100 |
α0 indicates absent synthesis of α-globin peptide chain; α+ indicates reduced synthesis of α-globin peptide chain; α indicates no mutation.
Genotyping of β-thalasse vcmia in Fujian province, Southeastern China.
| Genotype | Phenotype | No. patients detected | Constituent ratio (%) | |
|---|---|---|---|---|
| Common β-thalassemia | βIVS-2-654(C→T)/βN | β+/βN | 1486 | 41.95 |
| βCD41-42(-TCTT)/βN | β0/βN | 1072 | 30.26 | |
| βCD17(A→T)/βN | β0/βN | 434 | 12.25 | |
| β−28(A→G)/βN | β+/βN | 194 | 5.48 | |
| βCD27-28(+C)/βN | β0/βN | 106 | 2.99 | |
| βCD43(G→T)/βN | β0/βN | 21 | 0.59 | |
| βInt(ATG→AGG)/βN | β0/βN | 11 | 0.31 | |
| βCD26(G→A)/βN | βE | 75 | 2.11 | |
| β−29(A→G)/βN | β+/βN | 9 | 0.25 | |
| βIVS-1-1(G→T)/βN | β0/βN | 3 | 0.08 | |
| βIVS-1-5(G→T)/βN | β+/βN | 4 | 0.11 | |
| βCD71-72(+A)/βN | β0/βN | 26 | 0.73 | |
| βCD14-15(+G)/βN | β0/βN | 3 | 0.08 | |
| βCAP+40-+43(-AAAC)/βN | β+/βN | 7 | 0.2 | |
| β−30(T→C)/βN | β+/βN | 2 | 0.06 | |
| βIVS-2-654(C→T) | β+/β+ | 12 | 0.34 | |
| βIVS-2-654(C→T)/ | β+/β0 | 13 | 0.37 | |
| βIVS-2-654(C→T)/ | β+/β0 | 6 | 0.17 | |
| βIVS-2-654(C→T)/ | β+/β+ | 1 | 0.03 | |
| βIVS-2-654(C→T)/ | β+/β0 | 2 | 0.06 | |
| βIVS-2-654(C→T)/ | β+/βE | 1 | 0.03 | |
| βIVS-2-654(C→T)/ | β+/β+ | 1 | 0.03 | |
| βIVS-2-654(C→T)/ | β+/β0 | 1 | 0.03 | |
| βCD41-42(-TCTT)/ | β0/β0 | 5 | 0.14 | |
| βCD41-42(-TCTT)/ | β0/β0 | 2 | 0.06 | |
| βCD41-42(-TCTT)/ | β0/β+ | 3 | 0.08 | |
| βCD41-42(-TCTT)/ | β0/β0 | 1 | 0.03 | |
| βCD17(A→T)/ | β0/β0 | 1 | 0.03 | |
| βCD17(A→T)/ | β0/β+ | 2 | 0.06 | |
| βCD17(A→T)/ | β0/βE | 1 | 0.03 | |
| β−28(A→G)/ | β+/β+ | 4 | 0.11 | |
| βCD26(G→A)/ | βE/βE | 4 | 0.11 | |
| β−29(A→G)/ | β+/β0 | 1 | 0.03 | |
| Subtotal | — | 3514 | 99.21 | |
| Rare β-thalassemia | Deletional SEA-HPFH | β0/βN | 6 | 0.17 |
| Chinese Gγ+(Aγδβ0) | β0/βN | 6 | 0.17 | |
| Taiwanese deletion | β0/βN | 1 | 0.03 | |
| β+22(G→A)/βN | β+/βN | 2 | 0.06 | |
| βCD30(G→A)/βN | β0/βN | 2 | 0.06 | |
| βCD90(G→T)/βN | β0/βN | 2 | 0.06 | |
| βCD54-58(−TTATGGGCAACCC)/βN | β0/βN | 2 | 0.06 | |
| βCD36(-C)/βN | β0/βN | 2 | 0.06 | |
| βIVS-2-5((G>C)/βN | β+/βN | 1 | 0.03 | |
| βCD8-9(+G)/βN | β0/βN | 1 | 0.03 | |
| βTermCD+32(Aå C)/βN | β+/βN | 1 | 0.03 | |
| βIVS-I-128(Tå G)/βN | β+/βN | 1 | 0.03 | |
| βIVS-I-110(Gå A)/βN | β+/βN | 1 | 0.03 | |
| Subtotal | — | 28 | 0.79 | |
| Total | — | 3542 | 100 |
β0 indicates absent synthesis of β-globin peptide chain; β+ indicates reduced synthesis of β-globin peptide chain; N indicates no mutation; SEA-HPFH, Southeast Asian hereditary persistence of fetal hemoglobin.
Figure 1DNA sequencing reveals hemoglobin variants in 7 rare forms of β-thalassemia. (A) CD90(G > T); (B) CD54-58(−TATGGGCAACCCT); (C) IVS-II-5(G > C); (D) CD8-9(+G); (E), TermCD + 32(A > C); (F) IVS-I-128 (T > G); (G) IVS-I-110(G > A).
Genotyping of concurrent α- and β-thalassemias in Fujian province, Southeastern China
| Genotype | Phenotype | No. patients detected | Constituent ratio (%) | |
|---|---|---|---|---|
| Commonconcurrent α- and β-thalassemias | βIVS-2-654(C→T)/βN/–SEA/αα | β+/βNα0/α | 23 | 12.37 |
| βIVS-2-654(C→T)/βN/-α3.7/αα | β+/βNα+/α | 24 | 12.9 | |
| βIVS-2-654(C→T)/βN/-α-α4.2/αα | β+/βNα+/α | 7 | 3.76 | |
| βIVS-2-654(C→T)/βN/αQSα/αα | β+/βNα+/α | 6 | 3.23 | |
| βIVS-2-654(C→T)/βN/αWSα/αα | β+/βNα+/α | 1 | 0.54 | |
| βIVS-2-654(C→T)/βN/αCSα/αα | β+/βNα+/α | 1 | 0.54 | |
| βIVS-2-654(C→T)/βN/–SEA/-α3.7 | β+/βNα0/α+ | 1 | 0.54 | |
| βCD41-42(-TCTT)/βN/–SEA/αα | β0/βNα0/α | 24 | 12.9 | |
| βCD41-42(-TCTT)/βN/-α3.7/αα | β0/βNα+/α | 26 | 13.98 | |
| βCD41-42(-TCTT)/βN/-α4.2/αα | β0/βNα+/α | 6 | 3.23 | |
| βCD41-42(-TCTT)/βN/–THAI/αα | β0/βNα0/α | 1 | 0.54 | |
| βCD41-42(-TCTT)/βN/αWSα/αα | β0/βNα+/α | 5 | 2.69 | |
| βCD41-42(-TCTT)/βN/αCSα/αα | β0/βNα+/α | 2 | 1.08 | |
| βCD41-42(-TCTT)/βN/-α4.2/αWSα | β0/βNα+/α+ | 1 | 0.54 | |
| βCD27-28(+C)/βN/–SEA/αα | β0/βNα0/α | 1 | 0.54 | |
| βCD27-28(+C)/βN/-α3.7/αα | β0/βNα+/α | 1 | 0.54 | |
| β−28(A→G)/βN/–SEA/αα | β+/βNα0/α | 4 | 2.15 | |
| βCD17(A→T)/βN/–SEA/αα | β0/βNα0/α | 16 | 8.6 | |
| βCD17(A→T)/βN/-α3.7/αα | β0/βNα+/α | 8 | 4.30 | |
| βCD17(A→T)/βN/-α4.2/αα | β0/βNα+/α | 3 | 1.61 | |
| βCD17(A→T)/βN/–THAI/αα | β0/βNα0/α | 1 | 0.54 | |
| βCD17(A→T)/βN/αQSα/αα | β0/βNα+/α | 2 | 1.08 | |
| βCD17(A→T)/βN/αCSα/αα | β0/βNα+/α | 1 | 0.54 | |
| βCD43(G→T)/βN/–SEA/αα | β0/βNα0/α | 1 | 0.54 | |
| βIVS-1-1(G→T)/βN/-α4.2/αα | β0/βNα+/α | 1 | 0.54 | |
| βCAP+40-+43(-AAAC)/βN/–SEA/αα | β+/βNα0/α | 2 | 1.08 | |
| βCAP+40-+43(-AAAC)/βN/-α3.7/αα | β+/βNα+/α | 1 | 0.54 | |
| β−28(A→G)/βN/-α3.7/αα | β+/βNα+/α | 3 | 1.61 | |
| Subtotal | — | 173 | 93.01 | |
| Rare concurrent α- and β-thalassemias | βCD41-42(-TCTT)/βN/HKαα/αα | β0/βNα+/α | 10 | 5.38 |
| βIVS-2-654(C→T)/βN/HKα/αα | β+/βNα+/α | 3 | 1.61 | |
| Subtotal | — | 13 | 6.99 | |
| Total | — | 186 | 100.00 |
α0 indicates absent synthesis of α-globin peptide chain; α+ indicates reduced synthesis of α-globin peptide chain; β0 indicates absent synthesis of β-globin peptide chain; β+ indicates reduced synthesis of β-globin peptide chain; α and N indicate no mutation.
Detection and phenotypes of hemoglobinopathy in Fujian province, Southeastern China.
| Hemoglobin variant | Phenotype | No. patients detected | Constituent ratio (%) |
|---|---|---|---|
| Hb Q-Thailand/-α4.2 | HbVar/α+ | 141 | 28.26 |
| Hb New York (CD113(GTG > GAG)) | HbVar | 317 | 63.53 |
| Hb J-Bangkok (CD56(GGC > GAC)) | HbVar | 35 | 7.01 |
| Hb G -Taipei (CD22(GAA > GGA)) | HbVar | 1 | 0.2 |
| Hb G-Coushatta(CD22(GAA > GCA)) | HbVar | 4 | 0.8 |
| Hb Maputo(CD47(GAT > TAT)) | HbVar | 1 | 0.2 |
| Total | — | 499 | 100 |
Figure 2DNA sequencing reveals hemoglobin variants in 6 rare forms of hemoglobinopathy. (A) CD74(GAC > CAC),Hb Q-Thailand; (B) CD113(GTG > GAG), Hb New York; (C) CD56(GGC > GAC), Hb J-Bangkok; (D) CD22(GAA > GGA), Hb G-Taipei; (E) CD22(GAA > GCA), Hb G-Coushatta; (F) CD47(GAT > TAT), Hb Maputo.