| Literature DB >> 36246595 |
Haiyan Luo1,2, Ting Huang1,2, Qing Lu1,2, Liuyang Zhang1,2, Yonghua Xu1,2, Yan Yang1,2, Zhen Guo2,3, Huizhen Yuan1,2, Yinqin Shen1,2, Shuhui Huang1,2, Bicheng Yang1,2, Yongyi Zou1,2, Yanqiu Liu1,2.
Abstract
Background and aims: Hemoglobinopathy associated with the HBB gene, with its two general subtypes as thalassemia and abnormal hemoglobin (Hb) variants, is one of the most prevalent hereditary Hb disorders worldwide. Herein we aimed to elucidate the prevalence of ß-thalassemia and abnormal hemoglobin variants and the prenatal diagnosis of the HBB gene in Jiangxi Province, southern central China.Entities:
Keywords: HBB; central China-southern central China; hemoglobinopathy; mutation spectrum; prenatal diagnosis
Year: 2022 PMID: 36246595 PMCID: PMC9554255 DOI: 10.3389/fgene.2022.992073
Source DB: PubMed Journal: Front Genet ISSN: 1664-8021 Impact factor: 4.772
Primers used for direct Sanger sequencing.
| Primers | Sequence (5′→3′) | Length (bp) |
|---|---|---|
| HBA1-F | TGG AGG GTG GAG ACG TCC TG | 20 |
| HBA1-R | TCC ATC CCC TCC TCC CGC CCC TGC CTT TTC | 30 |
| HBA2-F | TGG AGG GTG GAG ACG TCC TG | 20 |
| HBA2-R | CCA TTG TTG GCA CAT TCC GG | 20 |
| HBB-F | AAC TCC TAA GCC AGT GCC AGA AGA GC | 26 |
| HBB-R | ATG CAC TGA CCT CCC ACA TTC CC | 23 |
Detailed constitution of ß-hemoglobinopathy among 13,6149 participants in the Jiangxi region.
| Categories | Cases (n) | Ratio (%) |
|---|---|---|
| Heterozygous | 2,358 | 1.732 |
| Compound heterozygous | 9 | 0.007 |
| Composite αβ-thal carriers | 125 | 0.092 |
| Abnormal Hb variants | 56 | 0.041 |
| Total | 2,548 | 1.872 |
Genotype constitution of ß-thalassemia in Jiangxi Province.
| Genotypes | HGVS nomenclature | Cases (n) | Ratio (%) |
|---|---|---|---|
| IVS-II-654 (C>T) | c.316–197C>T | 1,075 | 45.42 |
| Codons 41/42 (-TTCT) | c.126_129delCTTT | 536 | 22.64 |
| Codon 17 (A>T) | c.52A>T | 253 | 10.69 |
| -28 (A>G) | c.-78A>G | 178 | 7.52 |
| Codons 27/28 (+C) | c.84_85insC | 115 | 4.86 |
| Codons 71/72 (+A) | c.216_217insA | 45 | 1.90 |
| Hb E | c.79G>A | 49 | 2.07 |
| -29 (A>G) | c.-79A>G | 30 | 1.27 |
| Codon 43 (G>T) | c.130G>T | 26 | 1.10 |
| CD54-58 (-TATGGGCAACCCT) | c.165_177 del TATGGGCAACCCT | 13 | 0.55 |
| Codons 14/15 (+G) | c.45_46insG | 11 | 0.46 |
| -28 (A>C) | c.-78A>C | 5 | 0.21 |
| Cap+40–43 (-AAAC) | c.-11_-8delAAAC | 4 | 0.17 |
| -31 (A>G) | c.-81A>C | 3 | 0.13 |
| IVS-I-1 (G>T) | c.92 + 1G>T | 2 | 0.08 |
| IVS-II-81 (C>T) | c.315 + 81C>T | 1 | 0.04 |
| IVS-II-47 (G>C) | c.315 + 47 G > C | 1 | 0.04 |
| IVS-II-300–308 (-A) | c.315 + 300-308delA | 1 | 0.04 |
| IVS-II-806 (G- > C) | c.315-45G > C | 1 | 0.04 |
| -72 (T>A) | c.-122T>A | 1 | 0.04 |
| Codon 30 (AGG>AGC) | c.93G>C | 1 | 0.04 |
| IVS-I-6 (T>G) | c.92 + 6T>G | 1 | 0.04 |
| IVS-I-110 (G>A) | c.93-21G>A | 1 | 0.04 |
| Initiation codon ATG>GTG | c.1A>G | 1 | 0.04 |
| SEA-HPFH | g.5201647_5229059del | 2 | 0.08 |
| Taiwanese | g.69997_71353del1357 | 2 | 0.08 |
| -28 (A>G)/IVS-II-81 (C>T) | — | 1 | 0.04 |
| Hb E/Hb E | — | 2 | 0.08 |
| -28 (A>G)/-28 (A>G) | — | 1 | 0.04 |
| IVS-II-654 (C>T)/CD27/28 (+C) | — | 1 | 0.04 |
| IVS-II-654 (C>T)/CD 41/42 (-TTCT) | — | 1 | 0.04 |
| CD 41/42 (-TTCT)/CD 27/28 (+C) | — | 1 | 0.04 |
| IVS-II-654 (C>T)/-28 (A>G) | — | 1 | 0.04 |
| Hb E/IVS-I-1 (G>T) | — | 1 | 0.04 |
| Total | — | 2,367 | 100 |
Genotypes of composite α- and ß-thalassemia in Jiangxi Region.
| α- | β- | Cases (n) | Ratio (%) |
|---|---|---|---|
| -α3.7/αα | βIVS−II−654 (C>T)/βN | 20 | 16.00 |
| --SEA/αα | 18 | 14.40 | |
| -α4.2/αα | 3 | 2.40 | |
| αCSα/αα | 3 | 2.40 | |
| αWSα/αα | 2 | 1.60 | |
| αQSα/αα | 2 | 1.60 | |
| αc.301-41_301-39delGGCα/αα | 1 | 0.80 | |
| -α3.7/--SEA | 1 | 0.80 | |
| --SEA/αα | βCodons41/42 (−TTCT)/βN | 14 | 11.20 |
| -α3.7/αα | 13 | 10.40 | |
| -α4.2/αα | 6 | 4.80 | |
| αWSα/αα | 1 | 0.80 | |
| αCSα/αα | 1 | 0.80 | |
| -α4.2/-α4.2 | 1 | 0.80 | |
| -α3.7/--SEA | 1 | 0.80 | |
| αQSα/--SEA | 1 | 0.80 | |
| --SEA/αα | βCodon17(A>T)/βN | 3 | 2.40 |
| -α3.7/αα | 2 | 1.60 | |
| -α4.2/αα | 2 | 1.60 | |
| αWSα/αα | 1 | 0.80 | |
| αCSα/αα | 1 | 0.80 | |
| --SEA/αα | β−28 (A>G)/βN | 4 | 3.20 |
| -α3.7/αα | 3 | 2.40 | |
| -α4.2/αα | 1 | 0.80 | |
| -α3.7/--SEA | 1 | 0.80 | |
| -α3.7/αα | βHbE/βN | 4 | 3.20 |
| αCSα/αα | 1 | 0.80 | |
| -α3.7/-α3.7 | 1 | 0.80 | |
| --SEA/αα | βCodons27/28 (+C)/βN | 2 | 1.60 |
| -α3.7/αα | 2 | 1.60 | |
| -α3.7/αα | βHbE/β HbE | 1 | 0.80 |
| αWSα/-α3.7 | 1 | 0.80 | |
| --SEA/αα | 1 | 0.80 | |
| -α3.7/αα | βCodons71/72(+A)/βN | 1 | 0.80 |
| --SEA/αα | 1 | 0.80 | |
| --SEA/αα | β−29 (A>G)/βN | 1 | 0.80 |
| --SEA/αα | βCAP+40–43 (−AAAC)/βN | 1 | 0.80 |
| -α3.7/αα | βIVS−I−1 (G>T)/βN | 1 | 0.80 |
| --SEA/αα | βCodons41/42(−TTCT)/β−28 (A>G) | 1 | 0.80 |
| Total | — | 125 | 100 |
Abnormal hemoglobin variants in HBB and the hematological characteristics in this cohort in Jiangxi Province.
| Hb variant | HGVS nomenclature | Hb (g/L) | MCV (fL) | MCH (pg) | Abnormal Hb concentration | Cases (n) | Ratio (%) |
|---|---|---|---|---|---|---|---|
| Hb J-Bangkok | c.170G>A (p.Gly57Asp) | 128.6 ± 8.3 | 92.1 ± 1.8 | 29.9 ± 1.0 | 51.5 ± 0.6 | 24 | 42.86 |
| Hb New York | c.341T>A (p.Val114Glu) | 120.7 ± 10.1 | 89.5 ± 2.7 | 29.1 ± 0.5 | 43.9 ± 0.4 | 11 | 19.64 |
| Hb G-Taipei | c.68A>G (p.Glu23Gly) | 134.5 ± 7.5 | 86.4 ± 0.7 | 28.2 ± 0.6 | 39.5 ± 0.7 | 10 | 17.86 |
| Hb G-Coushatta | c.68A>C (p.Glu23Ala) | 140.7 ± 16.4 | 83.0 ± 0.9 | 30.0 ± 1.5 | 41.5 ± 0.7 | 3 | 5.36 |
| Hb D-Los Angeles | c.364G>C (p.Glu122Gln) | 137.0 ± 12.7 | 86.5 ± 2.3 | 28.9 ± 1.1 | 39.1 ± 1.5 | 3 | 5.36 |
| Hb Yaizu | c.238G>A (p.Asp80Asn) | 130 | 85.4 | 26.4 | 39.8 | 1 | 1.79 |
| Hb Deer Lodge | c.8A>G (p His3Arg) | 130 | 80.8 | 26.9 | 44.4 | 1 | 1.79 |
| Hb E-Saskatoon | c.67G>A (p.Glu23Lys) | 127 | 84.5 | 29.8 | 40.5 | 1 | 1.79 |
| Hb G-Siriraj | c.22G>A (p.Glu8Lys) | 123 | 85.2 | 30.3 | 30.6 | 1 | 1.79 |
| Hb J-Bangkok and IVS-II-81 C>T | — | 135 | 87.6 | 29.8 | 50.8 | 1 | 1.79 |
| Total | — | — | — | — | — | 56 | 100 |
Hematological characteristics of the four subjects with novel variants.
| Subject | Sex | Age (years) | Genotype | Hb (g/L) | MCV (fL) | MCH (pg) | HbA2 (%) | Ferritin (ng/ml) |
|---|---|---|---|---|---|---|---|---|
| No.1 | Female | 25 | αc.301-41_301-39delGGCα/αα | 107 | 60.4 | 19.1 | 5.5 | 60.0 |
| βIVS−II−654 (C>T)/βN | ||||||||
| No.2 | Female | 23 | αα/αα | 94 | 68.6 | 20.8 | 2.3 | 15.67 |
| βIVS−II−47(G>C)/βN | ||||||||
| No.3 | Male | 25 | αα/αα | 105 | 60.4 | 19.1 | 2.6 | 12.54 |
| βIVS−II-300–308(−A)/βN | ||||||||
| No.4 | Female | 23 | αα/αα | 98 | 72.1 | 26.8 | 3.2 | — |
| βIVS−II−806(G>C)/βN |
“/” indicates “unknown”; The reference ranges of ferritin are from 30 ng/ml ∼ 204 ng/ml.
Comparison of ß-thal frequency among reproductive-age adults in different geographic areas in China.
| References PMID | Geographic areas | Subjects (n) | Methods | Frequency of | Frequency of αβ-thal |
|---|---|---|---|---|---|
| Zheng, 2021 34893129 | Guilin, Guangxi Zhuang Autonomous Region | 19,482 | Gap-PCR + PCR-RDB | 4.56% (889/19482) | 0.63% (123/19,482) |
| Xu, 2020 15113860 | Five regional centres in Guangdong Province | 7,792 | Gap-PCR + PCR-RDB | 2.54% (198/7,792) | 0.26% (20/7,792) |
| Wang, 2022 35119136 | Hainan Province | 166,936 | Gap-PCR + PCR-RDB | 1.38% (2,305/166,936) | 1.18% (1,976/166,936) |
| Wang, 2021 34893128 | Guiyang in Guizhou Province | 4,572 | PCR-RDB | 1.99% | 0.15% |
| (91/4,572) | (7/4,572) | ||||
| He, 2017 28674233 | Changsha in Hunan Province | 7,500 | PCR-RDB | 1.9% | 0.08% |
| (143/7,500) | (6/7,500) | ||||
| Cheng, 2022 35244037 | Eastern, Central, Western regions of Hubei Province | 11,875 | PCR-Flow cytometry | 1.92% | 0.03% |
| (228/11875) | (3/11,875) | ||||
| Lin, 2014 25000193 | Three geographical areas of Jiangxi Province | 9,489 | PCR-RDB | 1.70% | 0.12% |
| (161/9,489) | (11/9,489) | ||||
| Li, 2020 32719015 | Sichuan Province | 42,155 | Gap-PCR + PCR-RDB | 0.75% (317/42,155) | 0.045% (19/42,155) |