| Literature DB >> 36099017 |
Yali Pan1,2, Meihuan Chen1, YanHong Zhang3, Min Zhang1, Lingji Chen1, Na Lin1, Liangpu Xu1, Hailong Huang1,2.
Abstract
BACKGROUND: There is a high carrying rate of α-thalassemia in Fujian province. However, there are few large-scale studies on the correlation between genotype and phenotype in Fujian province. The purpose of this study was to analyze the phenotype and genotype in a cohort of 2923 patients with α-thalassemia in Fujian province, so as to provide reference data for screening and diagnosis of α-thalassemia in Fujian province.Entities:
Keywords: gene diagnosis; genotype; novel gene mutation; phenotype; α-thalassemia
Mesh:
Substances:
Year: 2022 PMID: 36099017 PMCID: PMC9551130 DOI: 10.1002/jcla.24696
Source DB: PubMed Journal: J Clin Lab Anal ISSN: 0887-8013 Impact factor: 3.124
Genotyping of α‐thalassemia in Fujian province
| Genotype | Phenotype | No. patients detected | Constituent ratio (%) | |
|---|---|---|---|---|
| Common α‐thalassemia | ‐‐SEA/αα | α0/α | 1894 | 64.80 |
| ‐α3.7/αα | α+/α | 554 | 18.95 | |
| ‐α4.2/αα | α+/α | 145 | 4.96 | |
| ‐‐SEA/‐α3.7 | α0/α+ | 35 | 1.20 | |
| ‐‐SEA/‐α4.2 | α0/α+ | 12 | 0.41 | |
| ‐α3.7/‐α4.2 | α+/α+ | 2 | 0.07 | |
| ‐α3.7/‐α3.7 | α+/α+ | 11 | 0.38 | |
| αQSα/αα | α+/α | 106 | 3.63 | |
| αCSα/αα | α+/α | 43 | 1.47 | |
| αWSα/αα | α+/α | 29 | 0.99 | |
| αQSα/αQSα | α+/α+ | 1 | 0.03 | |
| αCSα/αCSα | α+/α+ | 1 | 0.03 | |
| ‐α3.7/αQSα | α+/α+ | 2 | 0.07 | |
| ‐α3.7/αWSα | α+/α+ | 2 | 0.07 | |
| ‐α4.2/αQSα | α+/α+ | 1 | 0.03 | |
| ‐‐SEA/αQSα | α0/α+ | 4 | 0.14 | |
| ‐‐SEA/αCSα | α0/α+ | 1 | 0.03 | |
| ‐‐SEA/αWSα | α0/α+ | 2 | 0.07 | |
| Subtotal | — | 2845 | 97.33 | |
| Rare α‐thalassemia | ‐‐THAI/αα | α0/α | 12 | 0.41 |
| HKαα/‐‐SEA | α+/α0 | 1 | 0.03 | |
| CD5 (GCC>ACC) | α+/α | 1 | 0.03 | |
| Subtotal | — | 14 | 0.48 | |
| Common concurrent α‐and β‐thalassemia | ‐α3.7/αα/βCD41–42(‐TCTT)/βN | α+/α/β0/βN | 4 | 0.14 |
| ‐‐SEA/αα/βIVS‐2‐654(C→T)/βN | α0/α/β+/βN | 11 | 0.38 | |
| αWSα/αα/βIVS‐2‐654(C→T)/βN | α+/α/β+/βN | 1 | 0.03 | |
| ‐‐SEA/‐α4.2/βCD41–42(‐TCTT)/βN | α0/α+/β0/βN | 1 | 0.03 | |
| ‐α3.7/αα/βIVS‐2‐654(C→T)/βN | α+/α/β+/βN | 11 | 0.38 | |
| ‐α3.7/αα/βCAP + 40‐ + 43(‐AAAC)/βN | α+/α/β+/βN | 1 | 0.03 | |
| ‐‐SEA/‐α3.7/βCD41–42(‐TCTT)/βN | α0/α+/β0/βN | 1 | 0.03 | |
| ‐α4.2/αα/βCD17(A→T)/βN | α+/α/β0/βN | 1 | 0.03 | |
| ‐‐SEA/αα/βCD17(A→T)/βN | α0/α/β0/βN | 3 | 0.10 | |
| ‐‐SEA/αα/β‐28(A→G)/βN | α0/α/β+/βN | 4 | 0.14 | |
| ‐‐SEA/αα/βCD41‐42(‐TCTT)/βN | α0/α/β0/βN | 11 | 0.38 | |
| ‐‐SEA/‐α3.7/βIVS‐2‐654(C→T)/βN | α0/α+/β+/βN | 1 | 0.03 | |
| ‐‐SEA/αα/βCD27–28(+C)/βN | α0/α/β0/βN | 3 | 0.10 | |
| ‐‐SEA/αα/βCAP + 40‐ + 43(‐AAAC)/βN | α0/α/β+/βN | 1 | 0.03 | |
| ‐α3.7/αα/βCD17(A→T)/βN | α+/α/β0/βN | 2 | 0.07 | |
| ‐α3.7/αα/βCD71–72(+A)/βN | α+/α/β0/βN | 2 | 0.07 | |
| ‐α4.2/αα/βCD41–42(‐TCTT)/βN | α+/α/β0/βN | 2 | 0.07 | |
| αCSα/αα/βCD17(A→T)/βN | α+/α/β0/βN | 1 | 0.03 | |
| αCSα/αα/βIVS‐2‐654(C→T)/βN | α+/α/β+/βN | 1 | 0.03 | |
| ‐‐SEA/αα/βCD26(GAG→AAG)/βN | α0/α/βE/βN | 1 | 0.03 | |
| ‐α3.7/αα/β−28(A→G)/βN | α+/α/β+/βN | 1 | 0.03 | |
| Subtotal | — | 64 | 2.19 | |
| Total | — | 2923 | 100.00 |
Note: α0 indicates absent synthesis of α‐globin peptide chain; α+ indicates reduced synthesis of α‐globin peptide chain; α indicates no mutation. β0 indicates absent synthesis of β‐globin peptide chain; β+ indicates reduced synthesis of β‐globin peptide chain; N indicates no mutation.
Abbreviations: CS, Hb Constant Spring; HK, Hong Kong deletion; QS, Hb Quong Sze; SEA, Southeast Asian deletion; THAI, Thailand deletion; WS, Hb Westmead.
Comparison of hematological indices between three common deletional genotypes and three common non‐deletional genotypes of α‐thalassemia patients
| Genotype | No. | Gender (F/M) | Age (year) | RBC (×1012/L) | Hb (g/L) | MCV (fl) | MCH (pg) | HbA2 (%) | HbF (%) | SF (μg/L) |
|---|---|---|---|---|---|---|---|---|---|---|
| Deletional genotype | 2593 | 1839/754 | 27.0 (5.0, 31.0) | 5.3 (5.0, 5.8) | 112.0 (106.0, 120.0) | 67.5 (65.0, 69.5) | 21.2 (20.5, 21.9) | 2.3 (2.2, 2.5) | 0.6 (0.2, 0.9) | 47.6 (25.0, 89.5) |
| ‐‐SEA/αα | 1894 | 1312/582 | 27.0 (22.0, 31.0) | 5.2 (4.9, 5.7) | 112.0 (105.0, 122.3) | 68.4 (66.6, 69.9) | 21.7 (21.0, 22.3) | 2.3 (2.2, 2.4) | 0.3 (0.1, 0.5) | 55.6 (33.5103.6) |
| ‐α3.7/αα | 554 | 414/140 | 28.0 (25.0, 32.0) | 4.4 (4.0, 4.8) | 115.5 (107.5126.3) | 81.6 (79.8, 83.5) | 26.8 (26.1, 27.6) | 2.5 (2.4, 2.6) | 0.2 (0.1, 0.4) | 35.3 (13.1, 68.7) |
| ‐α4.2/αα | 145 | 113/32 | 28.0 (25.0, 32.0) | 4.4 (4.2, 4.8) | 116.0 (106.0, 125.0) | 80.8 (78.4, 81.4) | 26.2 (25.5, 27.2) | 2.5 (2.3, 2.6) | 0.4 (0.1, 0.6) | 47.8 (18.6114.2) |
| Non‐deletional genotype | 178 | 130/48 | 29.0 (24.0, 32.0) | 4.9 (4.5, 5.4) | 119.0 (111.0, 126.8) | 76.1 (72.2, 79.5) | 24.7 (23.0, 26.1) | 2.5 (2.4, 2.7) | 0.3 (0.1, 0.6) | 34.4 (13.8, 59.5) |
| αQSα/αα | 106 | 75/31 | 28.0 (3.0, 32.0) | 4.7 (4.4, 5.0) | 114.0 (106.8121.0) | 76.0 (75.0, 77.9) | 24.3 (23.6, 25.0) | 2.6 (2.5, 3.0) | 0.2 (0.1, 0.4) | 31.8 (16.6, 40.7) |
| αCSα/αα | 43 | 34/9 | 27.0 (25.5, 31.0) | 4.7 (4.3, 5.0) | 118.0 (112.0, 127.5) | 79.8 (76.8, 81.5) | 26.1 (24.6, 27.5) | 2.2 (2.1, 2.3) | 0.3 (0.1, 0.4) | 84.2 (16.5234.7) |
| αWSα/αα | 29 | 21/8 | 28.5 (25.5, 30.0) | 4.5 (4.3, 5.0) | 119.0 (104.5126.0) | 80.3 (71.6, 81.0) | 26.3 (22.3, 27.3) | 2.7 (2.5, 3.0) | 0.2 (0.1, 0.4) | 22.3 (8.8, 57.2) |
|
| ||||||||||
|
| <0.001 | <0.001 | <0.001 | <0.001 | <0.001 | <0.001 | 0.002 | 0.002 | ||
| 0.002 | <0.001 | <0.001 | <0.001 | <0.001 | <0.001 | 0.570 | 0.071 | |||
| 0.567 | 0.523 | 0.603 | 0.543 | 0.686 | 0.481 | 0.475 | 0.732 | |||
|
| ||||||||||
|
| 0.704 | 0.045 | 0.949 | <0.001 | <0.001 | <0.001 | 0.921 | 0.288 | ||
| 0.510 | 0.250 | 0.671 | 0.003 | 0.001 | 0.670 | 0.961 | 0.759 | |||
| 0.606 | 0.952 | 0.444 | 0.305 | 0.574 | 0.001 | 0.952 | 0.859 | |||
|
| ||||||||||
|
| 0.509 | <0.001 | <0.001 | <0.001 | <0.001 | <0.001 | 0.421 | 0.191 | ||
Abbreviations: F, Female; M, Male.
Subjects with ‐‐SEA/αα compared with were subjects with ‐α3.7/αα.
Subjects with ‐‐SEA/αα compared with were subjects with ‐α4.2/αα.
Subjects with ‐α3.7/αα compared with were subjects with ‐α4.2/αα.
Subjects with αQSα/αα compared with were subjects with αCSα/αα.
Subjects with αQSα/αα compared with were subjects with αWSα/αα.
Subjects with αCSα/αα compared with were subjects with αWSα/αα.
Subjects with deletional genotype compared with were subjects with non‐deletional genotype.
All hematological indices with more than one records are presented as median (95% confidence interval). Bootstrap method is used in computing 95% confidence intervals.
p < 0.05, Kruskal–Wallis test.
Hematological indices and genetic results of the patient with α‐thalassemia
| Gender | Age (year) | Hb (g/L) | MCV (fl) | MCH (pg) | HbA2 (%) | HbF (%) | HGVS | Mutational genotype |
|---|---|---|---|---|---|---|---|---|
| Female | 36 | 86 | 66.4 | 19.1 | 1.9 | 0 | HBA1:c.16G>A | CD5 (GCC>ACC) |
FIGURE 1Sequencing of the α1‐globin mutation