| Literature DB >> 23383304 |
Min Lin1, Ying-Fang Wen, Jiao-Ren Wu, Qian Wang, Lei Zheng, Gui-Rong Liu, Yue Huang, Hui Yang, Fen Lin, Xiao-Fen Zhan, Chun-Ping Lin, Hui-Tian Yang, Qiu-Qing Weng, Fen-Ting Huang, Yuan Wang, Mei-Qiong Yao, Hui-Zhou Chen, Di-Hong Wu, Jing-Bo Zeng, Ri-Xin Zeng, Hua Yang, Gui-Cai Li, Min Lu, Juan-Juan Zhu, Long-Xu Xie, Jun-Li Wang, Li-Ye Yang.
Abstract
BACKGROUND: Hemoglobinopathies are the most common inherited diseases in southern China. However, there have been only a few epidemiological studies of hemoglobinopathies in Guangdong province.Entities:
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Year: 2013 PMID: 23383304 PMCID: PMC3562339 DOI: 10.1371/journal.pone.0055024
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Figure 1Geographic location of the Meizhou region and its surrounding areas.
A: The Meizhou region in southern China. B: The eight areas in the Meizhou region investigated in this study: Meizhou urban (A)/Meixian (B), Pingyuan(C)/Jiaoling(D) (north), Dabu (E) (west), Fengshun (F) (south) and Xingning (H)/Wuhua (G) (east).
Figure 2Diagram for the screening of hemoglobin variants, α/β-thalassemia and HPFH/δβ-thalassemia.
α, β, Aγ and Gγ gene globin primers for PCR and sequencing.
| Name | Gene | Sequencing (5′-3′) | Product size (bp) |
| L | α2 gene |
| 880 |
| D |
| ||
| L | α1 gene |
| 880 |
| A |
| ||
| B1 | β gene(exon1-2) |
| 700 |
| B2 |
| ||
| B3 | β gene (exon 3) |
| 446 |
| B4 |
| ||
| Aγ-FP | Aγ gene |
| 658 |
| Aγ-RP |
| ||
| Gγ-FP | Gγ gene |
| 723 |
| Gγ-RP |
|
Figure 3Hemoglobin analysis of hemoglobin variants with cellulose acetate electrophoresis at pH = 8.6.
The electrophoresis phenomenon includes H, J, K, Normal, F/Q, G/D and E.
Hemoglobin variants among 15229 subjects from Meizhou region.
| Hemoglobin Variants | HGVS name | Residue | Substitution | Ele group | No | Percentage(%) |
| α-globin gene mutation | 33 | 45.2 | ||||
| Hb J-Broussais | HBA2:c.273G>T | 90(FG2) | Lys>Asn | J | 1 | 1.4 |
| Hb J-Wenchang-Wuming | HBA2:c.34A>C | 11(A9) | Lys>Gln | 4 | 5.5 | |
| Hb Q-Thailand | HBA1:c.223G>C | 74(EF3) | Asp>His | Q | 13 | 17.8 |
| Hb Queens | HBA2:c.104T>G | 34(B15) | Leu>Arg | G/D | 2 | 2.7 |
| Hb G-Waimanalo | HBA2:c.193G>A | 64(E13) | Asp>Asn | 1 | 1.4 | |
| Hb G-Chinese | HBA2:c.91G>C | 30(B11) | Glu>Gln | 12 | 16.4 | |
| β-globin gene mutation | 40 | 54.8 | ||||
| Hb J-Bangkok | HBB:c.170G>A | 56(D7) | Gly>Asp | J | 7 | 9.6 |
| Hb New York | HBB:c.341T>A | 113(G15) | Val>Glu | K | 12 | 16.4 |
| Hb G-Siriraj | HBB:c.22G>A | 7(A4) | Glu>Lys | G/D | 3 | 4.1 |
| Hb E | HBB:c.79G>A | 26(B8) | Glu>Lys | E | 18 | 24.7 |
| Total | 73 | 100 |
Ele group: electrophoresis group. The results of electrophoresis were classified as the ‘fast’ hemoglobin and ‘slow’ hemoglobin, including hemoglobin H, J, K, Bart’s, Normal, F, Q, G/D and E; No. : case number.
Figure 4DNA sequence of 9 kinds of hemoglobin variants. A:
Hb J-Broussais (HBA2:c.273G>T); B: Hb G-Chinese (HBA2:c.91G>C); C: Hb Hb J-Wenchang-Wuming (HBA2:c.34A>C); D: Hb Queens (HBA2:c.104T>G); E: Hb G-Siriraj (HBB:c.22G>A); F: Hb J-Bangkok (HBB:c.170G>A); G: Hb G-Waimanalo (HBA2:c.193G>A); H: Hb New York (HBB:c.341T>A); I: Hb Q-Thailand (HBA1:c.223G>C).
Figure 5Results of α and β thalassemia in gene chip. A:
The results of α and β thalassemia in the gene chip; B: The location of the probes dotted in the gene chip used for the reverse dot blot assay. Locations of wild-type and mutant probes are denoted N and M, respectively.
Population prevalence and genotypes of thalassemia among 1743 blood samples from Meizhou.
| Genotype | Type | No. | F (%) | CR (%) | AN | P (%) |
| α-thalassemia chromosomes | – | – | – | 124a | 7.11 | |
| –SEA/αα | alpha-1 | 85 | 4.88 | 46.45 | – | – |
| -α3.7/αα | alpha-2 | 12 | 0.69 | 6.56 | – | – |
| -α4.2/αα | alpha-2 | 8 | 0.46 | 4.37 | – | – |
| ααCS/αα | HbVar | 3 | 0.17 | 1.64 | – | – |
| ααQS/αα | HbVar | 1 | 0.06 | 0.55 | – | – |
| –SEA/−α3.7 | 1 | 0.06 | 0.55 | – | – | |
| –SEA/−α4.2 | 1 | 0.06 | 0.55 | – | – | |
| β-thalassemia chromosomes | – | – | – | 72b | 4.13 | |
| IVSII-654(C>T)/N | beta+ | 23 | 1.32 | 12.57 | – | – |
| CD41-42(-CTTT)/N | beta0 | 13 | 0.75 | 7.10 | – | – |
| −28(A>G)/N | beta+ | 8 | 0.46 | 4.37 | – | – |
| CD17(A>T)/N | beta0 | 8 | 0.46 | 4.37 | – | – |
| CD27-28(+C)/N | beta0 | 3 | 0.17 | 1.64 | – | – |
| βeM(G>A) | HbVar | 2 | 0.11 | 1.09 | – | – |
| −29(A>G)/N | beta+ | 1 | 0.06 | 0.55 | – | – |
| CD43(G>T)/N | beta0 | 1 | 0.06 | 0.55 | – | – |
| CD14-15(+G)/N | beta0 | 1 | 0.06 | 0.55 | – | – |
| IVSI-5(G>C)/N | beta+ | 1 | 0.06 | 0.55 | – | – |
| –SEA/αα and CD41-42(-CTTT)/N | 2 | 0.11 | 1.09 | – | – | |
| –SEA/αα and CD17(A>T)/N | 1 | 0.06 | 0.55 | – | – | |
| –SEA/αα and -28(A>G)/N | 1 | 0.06 | 0.55 | – | – | |
| -α3.7/αα and IVSII-654(C>T)/N | 4 | 0.23 | 2.19 | – | – | |
| -α3.7/αα and -28(A>G)/N | 1 | 0.06 | 0.55 | – | – | |
| -α4.2/αα and IVSII-654(C>T)/N | 2 | 0.11 | 1.09 | – | – | |
| Total | 183 | 10.50 | 100 | 196 | 11.24 |
No.: case number; F: genotype frequency; CR: constituent ratio; AN: allele number; P: percentage; aThese numbers are involved in the total number of α-thalassaemia alleles, including two cases of Hb H disease and 11 cases of α-thalassemia compound β-thalassemia. bThese numbers are involved in the total number of β-thalassemia alleles, including 11 cases of α-thalassemia compound β-thalassemia.
Figure 6Results of 2 cases of Vietnamese HPFH (FPFH-7) were identified by Gap-PCR.
Figure 7The MLPA result of Vietnamese HPFH (FPFH-7).
(1) The analysis of DNA product by ABI 3730 for Vietnamese HPFH; (2) Data histograms of Vietnamese HPFH.
Hematological and molecular findings of three cases of HF>5% samples.
| No | RBC(1012/L) | Hb(g/L) | HCT (%) | MCV(fL) | Hb A(%) | Hb A2(%) | Hb F(%) | Genotype |
| M-1 | 5.61 | 135 | 42.0 | 75.0 | 82.5 | 3.9 | 13.6 | HPFH-7; Vietnamese HPFH |
| M-2 | 5.20 | 122 | 38.7 | 74.5 | 81.2 | 4.3 | 14.5 | HPFH-7; Vietnamese HPFH |
| M-3 | 6.06 | 116 | 40.0 | 66.0 | 77.9 | 4.9 | 17.2 | Belgian Gγ(Aγδβ)0 –thalassemia |
RBC, red cell count; Hb, hemoglobin; HCT, hematocrit; MCV, mean corpuscular volume; MCH, mean corpuscular hemoglobin.
Figure 8The MLPA result of Belgian Gγ(Aγδβ)0 -thalassemia.
(1) The analysis of DNA product by ABI 3730 for Belgian Gγ(Aγδβ)0 -thalassemia; (2) Data histograms of Belgian Gγ(Aγδβ)0 -thalassemia.