Literature DB >> 30815053

A Computable Phenotype for Acute Respiratory Distress Syndrome Using Natural Language Processing and Machine Learning.

Majid Afshar1,2, Cara Joyce2, Anthony Oakey3, Perry Formanek4, Philip Yang4, Matthew M Churpek5, Richard S Cooper2, Susan Zelisko6, Ron Price6, Dmitriy Dligach2,3.   

Abstract

Acute Respiratory Distress Syndrome (ARDS) is a syndrome of respiratory failure that may be identified using text from radiology reports. The objective of this study was to determine whether natural language processing (NLP) with machine learning performs better than a traditional keyword model for ARDS identification. Linguistic pre-processing of reports was performed and text features were inputs to machine learning classifiers tuned using 10-fold cross-validation on 80% of the sample size and tested in the remaining 20%. A cohort of 533 patients was evaluated, with a data corpus of 9,255 radiology reports. The traditional model had an accuracy of 67.3% (95% CI: 58.3-76.3) with a positive predictive value (PPV) of 41.7% (95% CI: 27.7-55.6). The best NLP model had an accuracy of 83.0% (95% CI: 75.9-90.2) with a PPV of 71.4% (95% CI: 52.1-90.8). A computable phenotype for ARDS with NLP may identify more cases than the traditional model.

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Year:  2018        PMID: 30815053      PMCID: PMC6371271     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  24 in total

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2.  Mayo clinical Text Analysis and Knowledge Extraction System (cTAKES): architecture, component evaluation and applications.

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3.  Validation of an electronic surveillance system for acute lung injury.

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5.  Distinct molecular phenotypes of direct vs indirect ARDS in single-center and multicenter studies.

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7.  Performance of an automated electronic acute lung injury screening system in intensive care unit patients.

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9.  Acute respiratory distress syndrome: the Berlin Definition.

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10.  Accounting for Label Uncertainty in Machine Learning for Detection of Acute Respiratory Distress Syndrome.

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Journal:  IEEE J Biomed Health Inform       Date:  2018-02-28       Impact factor: 5.772

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  9 in total

1.  Identifying ARDS using the Hierarchical Attention Network with Sentence Objectives Framework.

Authors:  Kevin Lybarger; Linzee Mabrey; Matthew Thau; Pavan K Bhatraju; Mark Wurfel; Meliha Yetisgen
Journal:  AMIA Annu Symp Proc       Date:  2022-02-21

2.  External Validation of an Acute Respiratory Distress Syndrome Prediction Model Using Radiology Reports.

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Review 4.  Can Big Data and Machine Learning Improve Our Understanding of Acute Respiratory Distress Syndrome?

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5.  Comparison of radiographic pneumothorax and pneumomediastinum in COVID-19 vs. non-COVID-19 acute respiratory distress syndrome.

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6.  Multi-Modal Data Analysis for Pneumonia Status Prediction Using Deep Learning (MDA-PSP).

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7.  Impact of Clinician Recognition of Acute Respiratory Distress Syndrome on Evidenced-Based Interventions in the Medical ICU.

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8.  Serum ionised calcium and the risk of acute respiratory failure in hospitalised patients: a single-centre cohort study in the USA.

Authors:  Charat Thongprayoon; Wisit Cheungpasitporn; Api Chewcharat; Michael A Mao; Kianoush B Kashani
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9.  Publicly available machine learning models for identifying opioid misuse from the clinical notes of hospitalized patients.

Authors:  Brihat Sharma; Dmitriy Dligach; Kristin Swope; Elizabeth Salisbury-Afshar; Niranjan S Karnik; Cara Joyce; Majid Afshar
Journal:  BMC Med Inform Decis Mak       Date:  2020-04-29       Impact factor: 3.298

  9 in total

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