| Literature DB >> 30701329 |
Jie Zhang1, Junjun Cao1, Mingsong Zhu1, Mingguo Xu2, Feng Shi3.
Abstract
In order to establish a rapid detection method for Mycoplasma ovipneumoniae, this study used the loop-mediated isothermal amplification (LAMP) technique to carry out nucleic acid amplification and chromatographic visualization via a lateral flow dipstick (LFD) assay. The M. ovipneumoniae elongation factor TU gene (EF-TU) was detected using a set of specific primers designed for the EF-TU gene, and the EF-TU FIP was detected by biotin labeling, which was used in the LAMP amplification reaction. The digoxin-labeled probe specifically hybridized with LAMP products, which were visually detected by LFD. Here, we established the M. ovipneumoniae LAMP-LFD rapid detection method and tested the specificity, sensitivity, and clinical application of this method. Results showed that the optimized LAMP performed at 60 °C for 60 min, and LFD can specifically and visually detect M. ovipneumoniae with a minimum detectable concentration at 1.0 × 102 CFU/mL. The sensitivity of LAMP-LFD was 1000 times that of the conventional PCR detection methods, and the clinical lung tissue detection rate was 86% of 50 suspected sheep infected with M. ovipneumoniae. In conclusion, LAMP-LFD was established in this study to detect M. ovipneumoniae, a method that was highly specific, sensitive, and easy to operate, and provides a new method for the prevention and diagnosis of M. ovipneumoniae infection.Entities:
Keywords: Elongation factor Tu gene (EF-TU); Lateral flow dipstick; Loop-mediated isothermal amplification; Mycoplasma ovipneumoniae; Visual detection
Mesh:
Substances:
Year: 2019 PMID: 30701329 PMCID: PMC6353813 DOI: 10.1007/s11274-019-2601-5
Source DB: PubMed Journal: World J Microbiol Biotechnol ISSN: 0959-3993 Impact factor: 3.312
The specific primers and probes designed for M. ovipneumoniae detection
| Name of primers | Type | Sequences (5′→3′) | Sizes of amplicons (bp) |
|---|---|---|---|
| PCR | |||
| | Forward prime | ATGGCAGTTGTTAAAACTGGTG | 1209 |
| | Backward primer | TTATTTAATAATTTCAGTTACTGTTCC | |
| LAMP | |||
| | Forward-outer prime | AAAACAGTTGTAACCGGAATT | 211 |
| EF-TUB3 | Backward-outer primer | ATGGAGTATGTCTTCCACC | |
| | Forward-inner primer | Biotin -TACGGTCAACACCACGAAGAAGTTTTGTTTAACAAAAACCTTCAATCTGC | 165 |
| | Backward-inner primer | GGCAAGTTATTGCAAAACCAAAAACTTTTTCTTCTTTTTTAAGCGCGTAA | |
| LB | Loop-backward primer | TTCCCCACACTAAATTTAAAGCAGC | 117 |
| LF | Loop-forward primer | CGGCATTATCTCCGGCCATT | |
| Probe for LAMP-LFD | Hybridization probe | Digoxin -GTTCTTCTTCGTGGTGTTGA | / |
a5′-Labeled with biotin when used in the LAMP-LFD assay
b5′-Labeled with digoxin when used in the LAMP-LFD assay
Fig. 1LAMP primer design for M. ovipneumoniae EF-TU gene. A The location of M. ovipneumoniae EF-TU primers and probes in the sequence. B The location of M. ovipneumoniae EF-TU primers and probes
Fig. 2The establishment of M. ovipneumoniae LAMP-LFD assay. M: DNA Marker; 1: LAMP products; 2: Negative control. A calcein-visual LAMP amplification product. B Electrophoretic analysis of LAMP amplification products. C LAMP-LFD detection result
Specific analysis results of LAMP-LFD
| Bacteria | Strains | Result |
|---|---|---|
|
| EC-xj 01 | − |
|
| CVCC 1885 | − |
|
| CVCC 1791 | − |
|
| CGMCC 13295 | − |
|
| CGMCC 8011 | − |
|
| CVCC 3011 | − |
|
| CVCC 384 | + |
“+” means positive; “−” means negative
Fig. 3Specific analysis results of LAMP-LFD. A LAMP agarose gel electrophoresis. B LAMP-LFD detection. M: DNA Marker; 1: using sterile water as the template for negative control; 2–7: the genomic DNA of Escherichia coli, Staphylococcus aureus, Salmonella pullorum, M. Bovis, M. hyopneumoniae and M. mycoides subsp. Capri were used as template. 8: the genomic DNA of M. ovipneumoniae was used as the template
Fig. 4Repeatability analysis of LAMP-LFD. A LAMP agarose gel electrophoresis; B LAMP-LFD assay. M: DNA Marker; 1–6: the genomic DNA of M. ovipneumoniae (1.0 × 104 CFU/mL) was used as the template; 7: negative control
Fig. 5Sensitivity analysis of the M. ovipneumoniae LAMP-LFD. A calcium-visual LAMP sensitivity test. B LAMP agrogel electrophoresis method for sensitivity test. C Sensitivity test of LAMP-LFD method; D Sensitivity test of PCR assay. M: DNA Marker; 1–6: different concentrations of positive standard: 1 × 102 CFU/mL; 1 × 103 CFU/mL; 1 × 104 CFU/mL; 1 × 105 CFU/mL; 1 × 106 CFU/mL; 1 × 107 CFU/mL; 7: negative control
Detection results of clinical samples using gold standard, LAMP-LFD and the PCR assay
| Detection method | Positive number (case) | Negative number (case) | Positive rate (%) | Coincidence (%) |
|---|---|---|---|---|
| Pathogen separation | 43 | 7 | 86 | / |
| LAMP-LFD | 43 | 7 | 86 | 100 |
| PCR | 41 | 9 | 82 | 95.35 |