Yu-Ling Sun1, Chon-Ho Yen, Ching-Fu Tu. 1. Animal Technology Laboratories, Agricultural Technology Research Institute, Hsinchu City, Taiwan, R.O.C.
Abstract
Loop-mediated isothermal amplification (LAMP) combined with enzyme-linked immunosorbent assay (LAMP-ELISA) and with lateral flow dipstick (LAMP-LFD) are rapid, sensitive and specific methods for the visual detection of clinical pathogens. In this study, LAMP-ELISA and LAMP-LFD were developed for the visual detection of canine parvovirus (CPV). For LAMP, a set of four primers (biotin-labeled forward inner primers) was designed to specifically amplify a region of the VP2 gene of CPV. The optimum time and temperature for LAMP were 60 min and 65°C, respectively. The specific capture oligonucleotide probes, biotin-labeled CPV probe for LAMP-ELISA and fluorescein isothiocyanate-labeled CPV probe for LAMP-LFD were also designed for hybridization with LAMP amplicons on streptavidin-coated wells and LFD strips, respectively. For the comparison of detection sensitivity, conventional PCR and LAMP for CPV detection were also performed. The CPV detection limits by PCR, PCR-ELISA, LAMP, LAMP-ELISA and LAMP-LFD were 10(2), 10(2), 10(-1), 10(-1) and 10(-1) TCID50/ml, respectively. In tests using artificially contaminated dog fecal samples, the samples with CPV inoculation levels of ≥1 TCID50/ml gave positive results by both LAMP-ELISA and LAMP-LFD. Our data indicated that both LAMP-ELISA and LAMP-LFD are promising as rapid, sensitive and specific methods for an efficient diagnosis of CPV infection.
Loop-mediated isothermal amplification (LAMP) combined with enzyme-linked immunosorbent assay (LAMP-ELISA) and with lateral flow dipstick (LAMP-LFD) are rapid, sensitive and specific methods for the visual detection of clinical pathogens. In this study, LAMP-ELISA and LAMP-LFD were developed for the visual detection of canine parvovirus (CPV). For LAMP, a set of four primers (biotin-labeled forward inner primers) was designed to specifically amplify a region of the VP2 gene of CPV. The optimum time and temperature for LAMP were 60 min and 65°C, respectively. The specific capture oligonucleotide probes, biotin-labeled CPV probe for LAMP-ELISA and fluorescein isothiocyanate-labeled CPV probe for LAMP-LFD were also designed for hybridization with LAMP amplicons on streptavidin-coated wells and LFD strips, respectively. For the comparison of detection sensitivity, conventional PCR and LAMP for CPV detection were also performed. The CPV detection limits by PCR, PCR-ELISA, LAMP, LAMP-ELISA and LAMP-LFD were 10(2), 10(2), 10(-1), 10(-1) and 10(-1) TCID50/ml, respectively. In tests using artificially contaminated dog fecal samples, the samples with CPV inoculation levels of ≥1 TCID50/ml gave positive results by both LAMP-ELISA and LAMP-LFD. Our data indicated that both LAMP-ELISA and LAMP-LFD are promising as rapid, sensitive and specific methods for an efficient diagnosis of CPV infection.
Canine parvovirus type 2 (CPV-2), a member of the Parvovirus genus of the
family Parvoviridae, was first identified in 1978 [1, 14]. It has a small non-enveloped
and icosahedral capsid containing single-stranded DNA. The CPV genome is approximately 5.2-kb
[28] long and contains two open reading frames
(ORFs). ORF1 encodes two non-structural proteins (NS1 and NS2) through alternative splicing of
the transcribed viral mRNA, and ORF2 encodes two structural proteins (VP1 and VP2) [33]. The VP2 is the major capsid protein containing the
antigenic determination sites to play an important role in determining CPV antigenic
properties [17, 35]. CPV-2 is an epidemic enteric pathogen of dogs and causes acute gastroenteritis
and lymphopenia mostly in puppies [26, 27]. A few years after CPV-2 outbreak, two new antigenic
variants were characterized and termed as CPV-2a and CPV-2b to be the predominant type and
were spread and distributed all over the world rapidly [28, 29]. In 2000, a new antigenic type of CPV
was detected in Italy and rapidly spread to several countries [7].It is difficult to diagnose CPV infection from the main clinical signs, such as vomiting and
diarrhea, because these symptoms are common to other enteric diseases [12]. Some conventional methods used to detect CPV include electron
microscopy, virus isolation [36], latex agglutination
[3, 34],
hemagglutination [19, 20, 36] and enzyme-linked immunosorbent assay
(ELISA) [11, 15]. Many of these methods are effective and accurate in detecting viral infections in
the laboratory. However, they are often laborious, time-consuming, expensive and/or lack
specificity and sensitivity. With advances in molecular detection techniques, PCR [12, 37] and
real-time PCR [8, 10, 14, 16] have been established for CPV diagnosis with a varying degree of sensitivity and
specificity [9]. However, these techniques require
skilled technicians and can only be performed in a diagnostic or commercial laboratory by
employing specialized equipment not commonly available to veterinary clinics and impractical
for use in the field. A rapid, accurate, sensitive, simple and economical on-site method is
therefore needed for CPV detection, and one of the candidate methods is the technology of
loop-mediated isothermal amplification (LAMP). The major advantages of LAMP comparing with
conventional PCR are that (1) LAMP does not require a thermal cycler and can be performed
simply with a heating block and/or water bath, (2) the reaction result of LAMP can be observed
and justified by naked eyes, and (3) LAMP detection has a high sensitivity and can be
completed within 1 hr under well experimental operation [21, 22, 24].LAMP, first developed by Notomi et al. [24], is a powerful nucleic acid amplification technique that is sensitive and fast.
It easily amplifies target sequences under isothermal conditions usually ranging from 60 to
65°C. In LAMP, specific primers are combined with Bst polymerase, which has
strand displacement activity, to produce a large amount of amplified target DNA in <1 hr.
The amplified product can be analyzed by gel electrophoresis and/or visual inspection of
turbidity resulting from the formation of the magnesium pyrophosphate by-product [22]. Accordingly, LAMP technology has been widely used for
the detection of different pathogens [21]. To date,
LAMP has been developed to diagnose canine viruses, including canine distemper virus (CDV)
[5], rabies virus [4], influenza virus [13] and parvovirus
[6, 23, 30]. LAMP has been found to be promising as a sensitive and
cost-effective method for CPV detection.Recent studies have shown that LAMP combined with ELISA and with lateral flow dipstick (LFD)
are promising for application to pathogen diagnosis by visual field testing because they are
nearly instrument-free [2, 31, 32]. However, the application of
these detection methods remains to be explored in veterinary clinics. The objective of this
study was to appropriately develop and evaluate a detection system based on the application of
LAMP in conjunction with ELISA and LFD for convenient visual detection of CPV with high
sensitivity and specificity.
MATERIALS AND METHODS
CPV strain and genomic DNA preparation: The culture supernatant of CPV
Strain C154 (CPV-2b) containing viral particles at 1 × 107
TCID50/ml was kindly provided by Dr. C. K. Chuang of the
Agricultural Technology Research Institute, Taiwan. The CPV suspension was serially diluted
tenfold (106–10−2 TCID50/ml), and the CPV
genomic DNA was prepared from 100 µl of CPV supernatant using Viral Nucleic
Acid Extraction Kit II (GeneDirex, Las Vegas, NV, U.S.A.), according to the manufacturer’s
instructions. The extracted DNA was subjected to PCR and LAMP.Design and synthesis of the primers and probe: According to the published
VP2 gene sequences of CPV [38] in GenBank (accession
numbers including AB054213, AB054214, U72695, U72696, U72698, AB115504, D78585, M38245,
FJ222821 and FJ005236) (including type 2a, 2b and 2c), sequences were aligned using the
software program DNASTAR (Madison, WI, U.S.A.). The conserved sequence within the VP2 gene
with high homology was selected as the target for designing the LAMP primer set using the
software PrimerExplorer V4 (http://primerexplorer.jp/elamp4.0.0/index.html). A set of four
specific primers was synthesized by MissionBiotech Inc. (Taipei, Taiwan). The primer pair,
CPV-F (5′-biotin labeled) and CPV-R, was used as the PCR primer to amplify a 319-bp fragment
(Fig. 1).
Fig. 1.
Nucleotide sequences alignment of the VP2 gene from different CPV isolates including
antigenic variants of type 2a, 2b and 2c. There were 5 (AB054213, AB054214, U72695,
U72696 and U72698), 2 (AB115504 and D78585), 2 (M38245 and FJ005236) and 1 (FJ222821)
CPV isolates from Taiwan, Japan, United State America and Italy, respectively. Partial
sequences of the VP2 were aligned. The designed nucleic acid sequences of
labeled-CPV-probe and primers were indicated, boxed and/or bolded.
Nucleotide sequences alignment of the VP2 gene from different CPV isolates including
antigenic variants of type 2a, 2b and 2c. There were 5 (AB054213, AB054214, U72695,
U72696 and U72698), 2 (AB115504 and D78585), 2 (M38245 and FJ005236) and 1 (FJ222821)
CPV isolates from Taiwan, Japan, United State America and Italy, respectively. Partial
sequences of the VP2 were aligned. The designed nucleic acid sequences of
labeled-CPV-probe and primers were indicated, boxed and/or bolded.The region selected as the internal capture probe was located inside the forward inner
primer (FIP)/backward inner primer (BIP) LAMP-amplified fragment of VP2 and labeled with
biotin at the 5′ end (MDBio Inc., Taipei, Taiwan). The optimum hybridization temperatures
for capture probes [biotin-labeled probe for LAMP–ELISA or PCR–ELISA and fluorescein
isothiocyanate (FITC)-labeled probe for LFD] were also evaluated.PCR: PCR was performed in a 25-µl volume containing 1
µl of CPV template DNA; 4 µM of each primer; 200
µM each of dATP, dCTP, dGTP and dTTP (Promega, Madison, WI, U.S.A.); 5
µl of 5 × PCR buffer (100 mM Tris-HCl, 9 mM MgCl2, 110 mM
NH4Cl, 110 mM KCl, 0.3% IGEPAL CA-630 and 0.25% Tween 20, pH 8.9); 0.5 U of
OneTaq DNA polymerase (New England BioLabs, Ipswich, MA, U.S.A.); and
H2O. The PCR conditions were as follows: denaturation at 95°C for 5 min,
followed by 35 cycles of denaturation at 95°C for 30 sec, annealing at 58°C for 45 sec,
extension at 72°C for 45 sec and final extension at 72°C for a further 10 min. The amplified
PCR products were analyzed by electrophoresis on a 2% agarose gel containing 0.5
µg/ml ethidium bromide.LAMP: LAMP was performed in a 20-µl volume containing 1.2
µM each of FIP and BIP; 0.3 µM each of the F3 and B3
primers; 10 µl of the 2 × reaction mixture (40 mM Tris-HCl, 20 mM KCl, 16
mM MgSO4, 20 mM (NH4)2SO4, 0.2% Tween 20, 1.6 M
betaine and 2.8 mM dNTPs, pH 8.8); 1 µl template DNA; and 1
µl of Bst DNA polymerase (DNA Amplification Kit; Eiken
Chemical Co., Tochigi, Japan). The reaction temperature was optimized by incubating the LAMP
mixture at 59, 61, 63 or 65°C for 60 min. The reaction time was optimized by incubating the
mixture for 15, 30, 45 and 60 min at a predetermined temperature (65°C). After heating at
80°C for 5 min to terminate the LAMP reaction, the LAMP products were analyzed by
electrophoresis on a 2% agarose gel stained with ethidium bromide.CPV detection by the LFD assay: A generic LFD strip (Milenia GenLine
HybriDetect; Milenia Biotec GmbH, Gieβen, Germany) was used for the LFD assay. Under the
test condition, a specific DNA probe was designed from the sequences between the F1P and B1P
regions of LAMP amplicons (Table 1). According to the detection system established, the DNA probe was labeled
with biotin or FITC at the 5′ end.
Table 1.
The information of primers and probes used in this study for the sequence
detection of VP2 gene of canine parvovirus
For this assay, 20 pmol of the FITC-labeled CPV probe was added to the
biotin-labeled LAMP amplicons and hybridized at 58°C for 15 min. After hybridization, 8
µl of the reaction solution was mixed with 120 µl assay
buffer, and the LFD strip was dipped into it for 5 min. The detection results were
determined by observing the control and test lines on the LFD strips.PCR and LAMP amplicon detection combined with ELISA: Detection using
PCR–ELISA and LAMP–ELISA (Fig. 2) was conducted as described by Ravan et al. [32]. Each well of a 96-well microtiter plate (Nunc A/S, Roskilde,
Denmark) was coated with 100 µl streptavidin (5 mg/ml;
Sigma, St. Louis, MO, U.S.A.) in 10 mM phosphate-buffered saline (PBS, pH 7, Sigma) and
refrigerated at 4°C overnight. The streptavidin-unbound sites were blocked with blocking
solution [1% (w/v) bovine serum albumin in PBS] for 1 hr at room temperature. The plate was
washed three times with PBST (PBS containing 0.05% Tween 20). Subsequently, each well
received 100 µl of 2.5 µM biotin-labeled CPV probe diluted
in PBST. The plates were incubated at 37°C for 1 hr. After washing three times with PBST,
the plate was subjected to PCR–ELISA or LAMP–ELISA.
Fig. 2.
Schematic representation of PCR-ELISA and LAMP-ELISA assays. The biotin-labeled
specific oligonucleotide probes are applied onto the surface of streptavidin-coated
well and used to hybridize with biotin-labeled LAMP amplicons or biotin-labeled PCR
products. After the nonspecific binding LAMP amplicons or biotin-labeled PCR products
were removed, the conjugates of streptavidin- horseradish peroxidase (HRP) were added
to perform the ELISA detection.
Schematic representation of PCR-ELISA and LAMP-ELISA assays. The biotin-labeled
specific oligonucleotide probes are applied onto the surface of streptavidin-coated
well and used to hybridize with biotin-labeled LAMP amplicons or biotin-labeled PCR
products. After the nonspecific binding LAMP amplicons or biotin-labeled PCR products
were removed, the conjugates of streptavidin- horseradish peroxidase (HRP) were added
to perform the ELISA detection.After amplification, 5 µl of the PCR or LAMP amplicons were diluted with
95 µl hybridization solution (50 mM phosphate buffer and 2 mM EDTA, pH 7.2)
and denatured at 95°C for 5 min. After cooling on ice, the denatured biotin-labeled PCR or
LAMP amplicons were added to the capture probe–streptavidin-coated well and incubated at
58°C for 1 hr. After washing three times with PBST, 100 µl of a 1:1,000
dilution of streptavidin–horseradishperoxide (PerkinElmer, Waltham, MA, U.S.A.) in PBS was
added to each well, and the plates were incubated at 37°C for 45 min. The wells were then
washed five times with PBST, and the 3,3′,5,5′-tetramethylbenzidine liquid substrate system
for ELISA (100 µl, Sigma) was added to each well. After incubation in the
dark at room temperature, the reaction was stopped by adding 50 µl of 2 M
H2SO4. Absorbance was detected at 450 nm using the TECAN/Sunrise
ELISA reader (Advance Biotechnology, Taipei, Taiwan).Preparation of DNA from fecal samples artificially contaminated with CPV:
Five grams of a CPV-free dog fecal sample in 50 ml of sterile PBS was
completely mixed by vortexing and distributed into 50 vials. Each vial contained a
1-ml aliquot of the fecal sample. The aliquots were inoculated with 100
µl CPV suspension (103–10−1
TCID50/ml). The samples were centrifuged at 6,000 ×
g for 15 min, and the supernatant was collected. The supernatant was used
for DNA extraction, and the samples were pretreated by rapid boiling and chilling as
described previously [23]. Template DNA was prepared
from the CPV-contaminated fecal samples using an Ultraclean Faecal DNA isolation kit (Mo Bio
laboratories Inc., Carlsbad, CA, U.S.A.), according to the manufacturer’s instructions.
RESULTS
Establishment of the LAMP assay for CPV detection: Several Taiwan isolates
and strains from Japan, Italy and USA including antigenic types 2a, 2b and 2c were selected
for developing effective visual detection methods for different CPV strains [38]. Given that the sequence of the VP2 gene of CPV is
frequently used as the target for CPV detection, the PCR/LAMP primers were designed on the
basis of the alignment of VP2 gene sequences from the selected strains.According to alignment analysis, a highly conserved sequence was selected as a suitable
target for designing the PCR/LAMP primers (Fig.
1). A set of four primers capable of recognizing six distinct regions on the target
sequence was designed: two outer primers (CPV-F3 and CPV-B3) and two inner primers (CPV-FIP
and CPV-BIP). For ELISA and LFD analyses, the CPV-FIP primer was labeled with biotin at the
5′ end. Locations and sequences of the primers and specific probes for CPV detection are
shown in Fig. 1 and Table 1, respectively.Optimization of the LAMP assay: When LAMP was performed to determine the
optimal temperature and time of reaction, a ladder-like pattern of the LAMP products
appeared on the 2% agarose gel at 59, 61, 63 and 65°C (Fig. 3A). A slight difference in band clarity was observed with increasing reaction
temperature. We selected 65°C as the optimal working temperature for LAMP, because of the
intense signal and specificity observed at the higher temperature. The LAMP product could be
amplified as early as 30 min when the template DNA concentration was high (isolated from
105 TCID50/ml of CPV), whereas at a low template
DNA concentration (10 TCID50/ml of CPV), the amplified LAMP was
observed at 45 min at least (Fig. 3B). We selected
the optimal reaction condition of 65°C for 60 min to ensure positive detection at a low
template DNA concentration.
Fig. 3.
Optimization of loop-mediated isothermal amplification (LAMP) assay for the detection
of VP2 sequence from CPV genomic DNA. (A) For the test of optimal temperature,
reaction temperature of 65, 63, 61 and 59°C was tested using the genomic DNA extracted
from 100 µl of CPV suspension (106
TCID50/ml) as template. (B) For the interactive test of
reaction time and template DNA concentration, the CPV genomic DNAs were extracted from
105, 103 and 101
TCID50/ml, and then, each CPV genomic DNA was used in
the LAMP reaction for 15, 30, 45 and 60 min. “N” indicated the negative control. “M”
indicated the 100-bp ladder DNA marker, and the molecular of partial DNA ladders were
also noted.
Optimization of loop-mediated isothermal amplification (LAMP) assay for the detection
of VP2 sequence from CPV genomic DNA. (A) For the test of optimal temperature,
reaction temperature of 65, 63, 61 and 59°C was tested using the genomic DNA extracted
from 100 µl of CPV suspension (106
TCID50/ml) as template. (B) For the interactive test of
reaction time and template DNA concentration, the CPV genomic DNAs were extracted from
105, 103 and 101
TCID50/ml, and then, each CPV genomic DNA was used in
the LAMP reaction for 15, 30, 45 and 60 min. “N” indicated the negative control. “M”
indicated the 100-bp ladder DNA marker, and the molecular of partial DNA ladders were
also noted.Sensitivity of PCR, LAMP and LAMP combined with the LFD assay: To
determine the sensitivity of CPV detection by LAMP and LAMP combined with LFD, the CPV stock
(107 TCID50/ml) was serially diluted tenfold, and
the CPV genomic DNA was prepared from 100 µl of CPV supernatant. Each viral
DNA (1 µl) was used as a template for conventional PCR or LAMP. In PCR, the
respective dilutions were subjected to thermal cycling using the primer pair of
biotin-labeled CPV-F and CPV-R (Table 1), which
amplified a 319-bp fragment from the VP2 gene of CPV (Fig. 4A). In LAMP, a 20-µl reaction mixture was the same as for conventional
LAMP; however, a 5′-biotinylated FIP was used to replace the FIP primer. The reaction was
performed at 65°C for 60 min, and the products were analyzed by electrophoresis on a 2%
agarose gel and the LFD assay. The results showed that PCR and LAMP could detect CPV at
concentrations of 102 TCID50/ml and 10−1
TCID50/ml, respectively (Fig. 4A and 4B) and that LAMP–LFD was also able to detect CPV at concentrations as
low as 10−1 TCID50/ml (Fig. 4C). Thus, LAMP and LAMP–LFD were both 1,000 times more
sensitive than conventional PCR.
Fig. 4.
Sensitivity of PCR (A), loop-mediated isothermal amplification (LAMP) (B), LAMP
combined with enzyme-linked immunosorbent assay (ELISA) (C) and LAMP combined with
lateral flow dipstick (LFD) (D) assays for the detection of VP2 sequence from CPV
genomic DNA. The templates of CPV genomic DNA were extracted from CPV suspension
ranging from 106 to 10−2 TCID50/ml.
“N” indicated the negative control, and “M” indicated the 100-bp DNA ladder
marker.
Sensitivity of PCR (A), loop-mediated isothermal amplification (LAMP) (B), LAMP
combined with enzyme-linked immunosorbent assay (ELISA) (C) and LAMP combined with
lateral flow dipstick (LFD) (D) assays for the detection of VP2 sequence from CPV
genomic DNA. The templates of CPV genomic DNA were extracted from CPV suspension
ranging from 106 to 10−2 TCID50/ml.
“N” indicated the negative control, and “M” indicated the 100-bp DNA ladder
marker.Sensitivity of PCR and LAMP combined with ELISA: The genomic DNAs
extracted from serially tenfold diluted CPV suspensions were used as templates for
biotin-labeled PCR and LAMP. As described in Materials and methods, the labeled PCR products
and LAMP amplicons were analyzed by ELISA. The overall scheme of PCR–ELISA and LAMP–ELISA is
shown in Fig. 2. The PCR–ELISA and LAMP–ELISA
results were spectrophotometrically obtained using a microplate reader that provided an
absorbance value corresponding to the amount of labeled PCR products or labeled LAMP
amplicons attached to the surface of microtiter plate wells. In PCR–ELISA, a linear
relationship (y1=−0.4064x + 2.127,
R=0.9833) was found at higher CPV titers, from
106 to 102 TCID50/ml. In LAMP–ELISA, CPV
dilutions corresponding to 106–102
TCID50/ml gave a plateau absorbance value of OD450
ranging from 1.78 to 1.66, and a linear relationship
(y2=−0.165x + 1.1216,
R=0.9869) was observed with CPV titers decreasing from
102 to 10−1 TCID50/ml (Fig. 5). It is indicated the detection limit of the developed PCR-ELISA and LAMP-ELISA was
102 and 10−1 TCID50/ml,
respectively.
Fig. 5.
Semi-quantification and limitation of LAMP-ELISA and PCR-ELISA for the detection of
VP2 sequence from CPV genomic DNA. Different titers of CPV (106 −
10−2 TCID50/ml) were applied to prepare the
genomic DNA and then applied for PCR or LAMP amplification. The PCR products and LAMP
amplicoms were used for the ELISA assays as the demonstration in Fig. 2. Each value was derived from three independent
detections, and the error bars mean standard deviation (SD).
Semi-quantification and limitation of LAMP-ELISA and PCR-ELISA for the detection of
VP2 sequence from CPV genomic DNA. Different titers of CPV (106 −
10−2 TCID50/ml) were applied to prepare the
genomic DNA and then applied for PCR or LAMP amplification. The PCR products and LAMP
amplicoms were used for the ELISA assays as the demonstration in Fig. 2. Each value was derived from three independent
detections, and the error bars mean standard deviation (SD).Specificity of LAMP detection by gel electrophoresis and LFD: In order to
evaluate the specificity of established LAMP, potential cross-reactions were performed using
DNA/RNA extracted from different pathogens including CDV, infectious caninehepatitis virus
(ICHV), Leptospira canicola and Bordetella bronchiseptica.
Biotin-labeled LAMP amplicons were analyzed by 2% agarose gel electrophoresis with ethidium
bromide and by the LFD assay. As shown in Fig.
6A, cross-amplification tests using templates from CDV, ICHV, L.
canicola and B. bronchiseptica showed that no amplicons were
detected, whereas the reaction using the CPV template gave a positive result. The similar
results were also observed in the LFD assay; the test band appeared only for CPV detection
(Fig. 6B). These results indicated that the
LAMP-based assay methods developed in this study were specific for CPV.
Fig. 6.
Specificity of loop-mediated isothermal amplification (LAMP) (A) combined with
lateral flow dipstick (LFD) (B) for the CPV detection. CPV genomic DNA, canine
distemper virus (CDV) RNA, canine hepatitis virus (ICHV) genomic DNA, B.
bronchiseptica genomic DNA and L. canicola genomic DNA
were applied in the LAMP detections. “N” indicated the negative control. “M” indicated
the DNA marker.
Specificity of loop-mediated isothermal amplification (LAMP) (A) combined with
lateral flow dipstick (LFD) (B) for the CPV detection. CPV genomic DNA, canine
distemper virus (CDV) RNA, caninehepatitis virus (ICHV) genomic DNA, B.
bronchiseptica genomic DNA and L. canicola genomic DNA
were applied in the LAMP detections. “N” indicated the negative control. “M” indicated
the DNA marker.CPV detection in artificially contaminated dog fecal samples: CPV was
artificially inoculated into dog fecal samples and subjected to CPV detection by PCR–ELISA,
LAMP–ELISA and LAMP–LFD. According to the results shown in Table 2, the fecal samples with CPV inoculated at ≥102
TCID50/ml gave positive results by PCR–ELISA, and both
LAMP–ELISA and LAMP–LFD provided positive results at ≥1
TCID50/ml of CPV. Importantly, the positive signals produced
by all of the detection methods including PCR–ELISA, LAMP–ELISA and LAMP–LFD could be easily
read with the naked eye.
Table 2.
Sensitivity of PCR-ELISA, LAMP-ELISA and LAMP-LFD assays for the CPV detection in
artificially contaminated fecal sample of dog
Methods
PBS(negative control)
CPV inoculation
(TCID50/ml) d)
10–1
1
101
102
103
PCR-ELISAa)
−
−
−
−
+
+
LAMP-ELISAb)
−
−
+
+
+
+
LAMP-LFDc)
−
−
+
+
+
+
a) Positive was determined by the value of OD450>0.261 determined by a
spectrophotometry (as shown in Fig. 6). b)
Positive was determined by the value of OD450>0.447 determined by a
spectrophotometry (as shown in Fig. 6). c)
Positive was determined by yielding test band on LFD strip. d) Each CPV inoculation
detected by different assays was performed from three independent fecal samples and
got the same detection result.
a) Positive was determined by the value of OD450>0.261 determined by a
spectrophotometry (as shown in Fig. 6). b)
Positive was determined by the value of OD450>0.447 determined by a
spectrophotometry (as shown in Fig. 6). c)
Positive was determined by yielding test band on LFD strip. d) Each CPV inoculation
detected by different assays was performed from three independent fecal samples and
got the same detection result.
DISCUSSION
Several detection methods have been developed to detect CPV proteins and nucleic acids, and
many of these tests are effective and accurate in detecting the viral infection in
laboratory. However, they require expensive equipment and are often laborious and
time-consuming. Early and rapid diagnosis is necessary so that CPV-infecteddogs can be
isolated to prevent the spread of the disease and to administer supportive treatment for
reducing morbidity and mortality. Therefore, a novel nucleic acid amplification method,
termed LAMP, which amplifies specific DNA sequences under isothermal conditions within a few
hours, was developed as a simple, rapid, specific and cost-effective alternative [24]. LAMP is an excellent technology for the detection of
nucleic acids present at very low levels in biological and environmental samples with its
remarkable sensitivity. Therefore, LAMP could be applied to gene analysis and study of
genetic traits and mostly to detect etiological cause of infections.In the present study, the CPV detection limit by PCR, PCR-ELISA, LAMP, LAMP–ELISA and
LAMP–LFD was 102, 102, 10−1, 10−1 and
10−1 TCID50/ml, respectively. The results indicated
that the sensitivity of LAMP–ELISA and LAMP–LFD for CPV detection is higher than that of
conventional molecular methods. The results could be easily visualized with the naked eye.
In addition to reducing assay time and elevating the sensitivity, combination of LAMP with
ELISA or with LFD confirmed amplicon identity by hybridization and eliminates the need to
handle, such as ethidium bromide.Our results confirmed the previous report of CPV detection from CPV-suspected fecal samples
by LAMP having a detection limit of 10−1 TCID50/ml
[6] and to show that LAMP is more sensitive than
PCR-based tests. We have demonstrated this consistently in the present study. Our results
also showed that LAMP–ELISA was more sensitive than PCR–ELISA; a positive signal was
detected at 102 TCID50/ml by PCR–ELISA, while
LAMP–ELISA provided a positive signal at 10−1
TCID50/ml. Furthermore, the performance of LAMP and PCR
diagnostic systems has been extensively compared by several groups. According to the report
of Cho et al. [6], the detection
rates of CPV-suspected fecal samples by LAMP and PCR were 80% and 74%, respectively.
Mukhopadhyay et al. [23] also
compared the detection rates of CPV by LAMP and PCR from clinical samples to be 74.28% and
57.85%. In general, LAMP has been found to have sensitivity similar or superior to that of
PCR [18, 25,
32]. We have demonstrated this consistency of the
12 clinical samples tested and 10 (83%) and 8 (67%) were detected positive for CPV by LAMP
and PCR, respectively (data not shown). The positive results of CPV detection could be
presented fully when LAMP combined with ELISA and LFD. However, immunization with
modified-live CPV vaccine may result in shedding of the virus for a period of 3 to 14 days
post vaccination. Therefore, it is possible that there is a positive result that can be
produced by a recent CPV vaccination with our developed LAMP–ELISA and LAMP–LFD assays.In the present report, we described the development of LAMP–ELISA and LAMP–LFD diagnostic
systems with an assay time of <3 hr for CPV levels of clinical concern with a pretty high
sensitivity. We have known the most commercial test kits for CPV diagnosis are fabricated by
the immunochromatographic assay or ELISA technology. The detection by the kits can be
completed within mins, but the detection limit of the kits is approximate 103
TCID50/ml of CPV in canine feces. The purpose of our study was
to develop a highly sensitive assay used to detect the canineCPV as possible as early after
the virus infection. Early detection is a key in the control of virus transmission among
dogs. Although the overall detection time is about 3 hr including sample preparation and
detection, the test procedure of the developed LAMP–ELISA and LAMP–LFD assays is easy to be
performed and can be used in field test. Our system comprised the amplification of a part of
VP2 sequences that is unique to CPV, followed by hybridization to a specific probe for exact
identification of CPV. Our results confirmed the results of recent reports that indicated
LAMP–ELISA or LAMP–LFD to be highly-sensitive methods that can be easily applied for the
visual detection of clinical pathogens [2, 32]. The high sensitivity of LAMP–ELISA and LAMP–LFD may
allow the identification of dogs shedding CPV at low titers in their feces, helping
veterinarians to adopt adequate measures of prophylaxis to prevent CPV infection.Our data also showed that the CPV detection limit for artificially contaminated fecal
samples using LAMP–ELISA and LAMP–LFD was ≥1 TCID50/ml. This
sensitivity was lower than the results shown in Figs.
4, 5 and Table 2. We suggest that the lower sensitivity of CPV detection in
fecal samples than in PBS may be related to loss of the virus during isolation of CPV from
the fecal samples. It may also be related to the presence of intestinal cells and bacteria
along with CPV in the prepared DNA, which might have reduced the efficiency of LAMP in
amplifying the target CPV DNA from the samples. However, our results indicated that both
LAMP–ELISA and LAMP–LFD developed in the present study are applicable to CPV detection in
naturally contaminated fecal samples.In conclusion, when LAMP was combined with ELISA or with LFD, the detection signal of LAMP
amplicons could be spectrophotometrically obtained and easily read with the naked eye and
without agarose gel electrophoresis. The assays could be completed within 3 hr. To our
knowledge, this is the first report employing LAMP combined with ELISA or LFD for detection
of CPV. These results indicated that a simple and cost-effective LAMP-based technique can be
developed into a rapid and reliable molecular diagnostic method with potential for routine
use in the clinical detection of CPV and other veterinary clinical pathogens.
Authors: H K Mukhopadhyay; S Amsaveni; S L Matta; P X Antony; J Thanislass; R M Pillai Journal: Lett Appl Microbiol Date: 2012-07-24 Impact factor: 2.858