Literature DB >> 30639925

Rapid tilt-series acquisition for electron cryotomography.

Georges Chreifi1, Songye Chen2, Lauren Ann Metskas3, Mohammed Kaplan1, Grant J Jensen4.   

Abstract

Using a new Titan Krios stage equipped with a single-axis holder, we developed two methods to accelerate the collection of tilt-series. We demonstrate a continuous-tilting method that can record a tilt-series in seconds, but with loss of details finer than ∼4 nm. We also demonstrate a fast-incremental method that can record a tilt-series several-fold faster than current methods and with similar resolution. We characterize the utility of both methods in real biological electron cryotomography workflows. We identify opportunities for further improvements in hardware and software and speculate on the impact such advances could have on structural biology.
Copyright © 2019 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Cryo-EM; Cryo-electron tomography; Electron cryotomography; Tilt-series

Year:  2019        PMID: 30639925      PMCID: PMC6389375          DOI: 10.1016/j.jsb.2018.12.008

Source DB:  PubMed          Journal:  J Struct Biol        ISSN: 1047-8477            Impact factor:   2.867


  20 in total

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Journal:  J Struct Biol       Date:  2012-01-08       Impact factor: 2.867

2.  Bacterial chemoreceptor arrays are hexagonally packed trimers of receptor dimers networked by rings of kinase and coupling proteins.

Authors:  Ariane Briegel; Xiaoxiao Li; Alexandrine M Bilwes; Kelly T Hughes; Grant J Jensen; Brian R Crane
Journal:  Proc Natl Acad Sci U S A       Date:  2012-02-21       Impact factor: 11.205

3.  Automated electron microscope tomography using robust prediction of specimen movements.

Authors:  David N Mastronarde
Journal:  J Struct Biol       Date:  2005-10       Impact factor: 2.867

4.  In situ structure of the complete Treponema primitia flagellar motor.

Authors:  Gavin E Murphy; Jared R Leadbetter; Grant J Jensen
Journal:  Nature       Date:  2006-08-02       Impact factor: 49.962

5.  Universal architecture of bacterial chemoreceptor arrays.

Authors:  Ariane Briegel; Davi R Ortega; Elitza I Tocheva; Kristin Wuichet; Zhuo Li; Songye Chen; Axel Müller; Cristina V Iancu; Gavin E Murphy; Megan J Dobro; Igor B Zhulin; Grant J Jensen
Journal:  Proc Natl Acad Sci U S A       Date:  2009-09-23       Impact factor: 11.205

6.  Computer visualization of three-dimensional image data using IMOD.

Authors:  J R Kremer; D N Mastronarde; J R McIntosh
Journal:  J Struct Biol       Date:  1996 Jan-Feb       Impact factor: 2.867

Review 7.  Structural biology in situ--the potential of subtomogram averaging.

Authors:  John A G Briggs
Journal:  Curr Opin Struct Biol       Date:  2013-03-04       Impact factor: 6.809

8.  Visualization of the type III secretion sorting platform of Shigella flexneri.

Authors:  Bo Hu; Dustin R Morado; William Margolin; John R Rohde; Olivia Arizmendi; Wendy L Picking; William D Picking; Jun Liu
Journal:  Proc Natl Acad Sci U S A       Date:  2015-01-12       Impact factor: 11.205

9.  Laboratory maintenance of Bdellovibrio.

Authors:  Carey Lambert; R Elizabeth Sockett
Journal:  Curr Protoc Microbiol       Date:  2008-05

10.  Implementation of a cryo-electron tomography tilt-scheme optimized for high resolution subtomogram averaging.

Authors:  Wim J H Hagen; William Wan; John A G Briggs
Journal:  J Struct Biol       Date:  2016-06-14       Impact factor: 2.867

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  17 in total

1.  In Situ Imaging and Structure Determination of Biomolecular Complexes Using Electron Cryo-Tomography.

Authors:  Mohammed Kaplan; William J Nicolas; Wei Zhao; Stephen D Carter; Lauren Ann Metskas; Georges Chreifi; Debnath Ghosal; Grant J Jensen
Journal:  Methods Mol Biol       Date:  2021

2.  Novel transient cytoplasmic rings stabilize assembling bacterial flagellar motors.

Authors:  Mohammed Kaplan; Catherine M Oikonomou; Cecily R Wood; Georges Chreifi; Poorna Subramanian; Davi R Ortega; Yi-Wei Chang; Morgan Beeby; Carrie L Shaffer; Grant J Jensen
Journal:  EMBO J       Date:  2022-03-18       Impact factor: 14.012

3.  High resolution electron tomography and segmentation-by-modeling interpretation in Bsoft.

Authors:  J Bernard Heymann
Journal:  Protein Sci       Date:  2020-09-09       Impact factor: 6.725

4.  Beam image-shift accelerated data acquisition for near-atomic resolution single-particle cryo-electron tomography.

Authors:  Jonathan Bouvette; Hsuan-Fu Liu; Xiaochen Du; Ye Zhou; Andrew P Sikkema; Juliana da Fonseca Rezende E Mello; Bradley P Klemm; Rick Huang; Roel M Schaaper; Mario J Borgnia; Alberto Bartesaghi
Journal:  Nat Commun       Date:  2021-03-30       Impact factor: 14.919

5.  Cryogenic electron microscopy approaches that combine images and tilt series.

Authors:  Thomas Calcraft; Peter B Rosenthal
Journal:  Microscopy (Oxf)       Date:  2022-02-18       Impact factor: 1.571

6.  Rapid tilt-series method for cryo-electron tomography: Characterizing stage behavior during FISE acquisition.

Authors:  Georges Chreifi; Songye Chen; Grant J Jensen
Journal:  J Struct Biol       Date:  2021-03-11       Impact factor: 3.234

7.  Subnanometer-resolution structure determination in situ by hybrid subtomogram averaging - single particle cryo-EM.

Authors:  Ricardo M Sanchez; Yingyi Zhang; Wenbo Chen; Lea Dietrich; Mikhail Kudryashev
Journal:  Nat Commun       Date:  2020-07-24       Impact factor: 14.919

8.  Fast and accurate defocus modulation for improved tunability of cryo-EM experiments.

Authors:  Radostin Danev; Hirofumi Iijima; Mizuki Matsuzaki; Sohei Motoki
Journal:  IUCrJ       Date:  2020-04-25       Impact factor: 4.769

Review 9.  Coming of Age: Cryo-Electron Tomography as a Versatile Tool to Generate High-Resolution Structures at Cellular/Biological Interfaces.

Authors:  Zuoneng Wang; Qingyang Zhang; Carsten Mim
Journal:  Int J Mol Sci       Date:  2021-06-08       Impact factor: 5.923

10.  Structure of RyR1 in native membranes.

Authors:  Wenbo Chen; Mikhail Kudryashev
Journal:  EMBO Rep       Date:  2020-03-09       Impact factor: 8.807

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