Literature DB >> 35275182

Cryogenic electron microscopy approaches that combine images and tilt series.

Thomas Calcraft1, Peter B Rosenthal1.   

Abstract

Cryogenic electron microscopy can be widely applied to biological specimens from the molecular to the cellular scale. In single-particle analysis, 3D structures may be obtained in high resolution by averaging 2D images of single particles in random orientations. For pleomorphic specimens, structures may be obtained by recording the tilt series of a single example of the specimen and calculating tomograms. Where many copies of a single structure such as a protein or nucleic acid assembly are present within the tomogram, averaging of the sub-volumes (subtomogram averaging) has been successfully applied. The choice of data collection method for any given specimen may depend on the structural question of interest and is determined by the radiation sensitivity of the specimen. Here, we survey some recent developments on the use of hybrid methods for recording and analysing data from radiation-sensitive biological specimens. These include single-particle reconstruction from 2D images where additional views are recorded at a single tilt angle of the specimen and methods where image tilt series, initially used for tomogram reconstruction, are processed as individual single-particle images. There is a continuum of approaches now available to maximize structural information obtained from the specimen.
© The Author(s) 2022. Published by Oxford University Press on behalf of The Japanese Society of Microscopy. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Entities:  

Keywords:  cryo-EM; cryo-ET; hybrid method; single-particle analysis; subtomogram averaging; tilt series

Mesh:

Year:  2022        PMID: 35275182      PMCID: PMC8855521          DOI: 10.1093/jmicro/dfab053

Source DB:  PubMed          Journal:  Microscopy (Oxf)        ISSN: 2050-5698            Impact factor:   1.571


  59 in total

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Authors:  M Radermacher; T Wagenknecht; A Verschoor; J Frank
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2.  Subtomogram analysis using the Volta phase plate.

Authors:  Maryam Khoshouei; Stefan Pfeffer; Wolfgang Baumeister; Friedrich Förster; Radostin Danev
Journal:  J Struct Biol       Date:  2016-05-25       Impact factor: 2.867

3.  Addressing preferred specimen orientation in single-particle cryo-EM through tilting.

Authors:  Yong Zi Tan; Philip R Baldwin; Joseph H Davis; James R Williamson; Clinton S Potter; Bridget Carragher; Dmitry Lyumkis
Journal:  Nat Methods       Date:  2017-07-03       Impact factor: 28.547

4.  CTFFIND4: Fast and accurate defocus estimation from electron micrographs.

Authors:  Alexis Rohou; Nikolaus Grigorieff
Journal:  J Struct Biol       Date:  2015-08-13       Impact factor: 2.867

5.  Likelihood-based classification of cryo-EM images using FREALIGN.

Authors:  Dmitry Lyumkis; Axel F Brilot; Douglas L Theobald; Nikolaus Grigorieff
Journal:  J Struct Biol       Date:  2013-07-17       Impact factor: 2.867

6.  Efficient 3D-CTF correction for cryo-electron tomography using NovaCTF improves subtomogram averaging resolution to 3.4Å.

Authors:  Beata Turoňová; Florian K M Schur; William Wan; John A G Briggs
Journal:  J Struct Biol       Date:  2017-07-22       Impact factor: 2.867

7.  Improved applicability and robustness of fast cryo-electron tomography data acquisition.

Authors:  Fabian Eisenstein; Radostin Danev; Martin Pilhofer
Journal:  J Struct Biol       Date:  2019-08-16       Impact factor: 2.867

8.  Locating Macromolecular Assemblies in Cells by 2D Template Matching with cisTEM.

Authors:  Bronwyn A Lucas; Benjamin A Himes; Liang Xue; Tim Grant; Julia Mahamid; Nikolaus Grigorieff
Journal:  Elife       Date:  2021-06-11       Impact factor: 8.140

9.  Advances in Single-Particle Electron Cryomicroscopy Structure Determination applied to Sub-tomogram Averaging.

Authors:  Tanmay A M Bharat; Christopher J Russo; Jan Löwe; Lori A Passmore; Sjors H W Scheres
Journal:  Structure       Date:  2015-08-06       Impact factor: 5.006

10.  Estimation of high-order aberrations and anisotropic magnification from cryo-EM data sets in RELION-3.1.

Authors:  Jasenko Zivanov; Takanori Nakane; Sjors H W Scheres
Journal:  IUCrJ       Date:  2020-02-11       Impact factor: 4.769

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