Literature DB >> 23466038

Structural biology in situ--the potential of subtomogram averaging.

John A G Briggs1.   

Abstract

Cryo-electron tomography provides low-resolution 3D views of cells, organelles, or viruses. Macromolecular complexes present in multiple copies can be subsequently identified within the 3D reconstruction (the tomogram), computationally extracted, and averaged to obtain higher resolution 3D structures, as well as a map of their spatial distribution. This method, called subtomogram averaging or subvolume averaging, allows structures of macromolecular complexes to be resolved in situ. Recent applications have provided in situ structural data at resolutions of 2-4 nm on samples including polysomes, nuclear pores, vesicle coats, and viral surface proteins. Here I describe the method and discuss limitations, advances and recent applications. I speculate how the method will solve more structures at higher resolution, allowing in situ structural biology.
Copyright © 2013 Elsevier Ltd. All rights reserved.

Mesh:

Year:  2013        PMID: 23466038     DOI: 10.1016/j.sbi.2013.02.003

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  89 in total

1.  Structure of the immature HIV-1 capsid in intact virus particles at 8.8 Å resolution.

Authors:  Florian K M Schur; Wim J H Hagen; Michaela Rumlová; Tomáš Ruml; Barbara Müller; Hans-Georg Kräusslich; John A G Briggs
Journal:  Nature       Date:  2014-11-02       Impact factor: 49.962

2.  Using Tomoauto: A Protocol for High-throughput Automated Cryo-electron Tomography.

Authors:  Dustin R Morado; Bo Hu; Jun Liu
Journal:  J Vis Exp       Date:  2016-01-30       Impact factor: 1.355

3.  The Caltech Tomography Database and Automatic Processing Pipeline.

Authors:  H Jane Ding; Catherine M Oikonomou; Grant J Jensen
Journal:  J Struct Biol       Date:  2015-06-15       Impact factor: 2.867

4.  Native immunogold labeling of cell surface proteins and viral glycoproteins for cryo-electron microscopy and cryo-electron tomography applications.

Authors:  Hong Yi; Joshua D Strauss; Zunlong Ke; Eric Alonas; Rebecca S Dillard; Cheri M Hampton; Kristen M Lamb; Jason E Hammonds; Philip J Santangelo; Paul W Spearman; Elizabeth R Wright
Journal:  J Histochem Cytochem       Date:  2015-06-11       Impact factor: 2.479

Review 5.  Setting the dynein motor in motion: New insights from electron tomography.

Authors:  Danielle A Grotjahn; Gabriel C Lander
Journal:  J Biol Chem       Date:  2019-07-08       Impact factor: 5.157

6.  In Situ Imaging and Structure Determination of Biomolecular Complexes Using Electron Cryo-Tomography.

Authors:  Mohammed Kaplan; William J Nicolas; Wei Zhao; Stephen D Carter; Lauren Ann Metskas; Georges Chreifi; Debnath Ghosal; Grant J Jensen
Journal:  Methods Mol Biol       Date:  2021

7.  Frozen-hydrated chromatin from metaphase chromosomes has an interdigitated multilayer structure.

Authors:  Andrea Chicano; Eva Crosas; Joaquín Otón; Roberto Melero; Benjamin D Engel; Joan-Ramon Daban
Journal:  EMBO J       Date:  2019-01-04       Impact factor: 11.598

Review 8.  Focused ion beams in biology.

Authors:  Kedar Narayan; Sriram Subramaniam
Journal:  Nat Methods       Date:  2015-11       Impact factor: 28.547

Review 9.  Protein modeling: what happened to the "protein structure gap"?

Authors:  Torsten Schwede
Journal:  Structure       Date:  2013-09-03       Impact factor: 5.006

10.  Automated tilt series alignment and tomographic reconstruction in IMOD.

Authors:  David N Mastronarde; Susannah R Held
Journal:  J Struct Biol       Date:  2016-07-19       Impact factor: 2.867

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