Literature DB >> 22342930

The role of hydration in protein stability: comparison of the cold and heat unfolded states of Yfh1.

Miquel Adrover1, Gabriel Martorell, Stephen R Martin, Dunja Urosev, Petr V Konarev, Dmitri I Svergun, Xavier Daura, Pierandrea Temussi, Annalisa Pastore.   

Abstract

Protein unfolding occurs at both low and high temperatures, although in most cases, only the high-temperature transition can be experimentally studied. A pressing question is how much the low- and high-temperature denatured states, although thermodynamically equivalent, are structurally and kinetically similar. We have combined experimental and computational approaches to compare the high- and low-temperature unfolded states of Yfh1, a natural protein that, at physiologic pH, undergoes cold and heat denaturation around 0 °C and 40 °C without the help of ad hoc destabilization. We observe that the two denatured states have similar but not identical residual secondary structures, different kinetics and compactness and a remarkably different degree of hydration. We use molecular dynamics simulations to rationalize the role of solvation and its effect on protein stability. Crown Copyright Â
© 2012. Published by Elsevier Ltd. All rights reserved.

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Year:  2012        PMID: 22342930     DOI: 10.1016/j.jmb.2012.02.002

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  14 in total

1.  The Unfolded State of the C-Terminal Domain of L9 Expands at Low but Not at Elevated Temperatures.

Authors:  Natalie E Stenzoski; Bowu Luan; Alex S Holehouse; Daniel P Raleigh
Journal:  Biophys J       Date:  2018-07-23       Impact factor: 4.033

2.  Mechanism and Determinants of Amphipathic Helix-Containing Protein Targeting to Lipid Droplets.

Authors:  Coline Prévost; Morris E Sharp; Nora Kory; Qingqing Lin; Gregory A Voth; Robert V Farese; Tobias C Walther
Journal:  Dev Cell       Date:  2018-01-08       Impact factor: 12.270

3.  Characterizing Protein Hydration Dynamics Using Solution NMR Spectroscopy.

Authors:  Christine Jorge; Bryan S Marques; Kathleen G Valentine; A Joshua Wand
Journal:  Methods Enzymol       Date:  2018-12-04       Impact factor: 1.600

4.  Protein unfolded states populated at high and ambient pressure are similarly compact.

Authors:  Balasubramanian Harish; Richard E Gillilan; Junjie Zou; Jinqiu Wang; Daniel P Raleigh; Catherine A Royer
Journal:  Biophys J       Date:  2021-05-04       Impact factor: 3.699

5.  Trapping a salt-dependent unfolding intermediate of the marginally stable protein Yfh1.

Authors:  Bartolomé Vilanova; Domenico Sanfelice; Gabriel Martorell; Piero A Temussi; Annalisa Pastore
Journal:  Front Mol Biosci       Date:  2014-09-30

6.  "Invisible" conformers of an antifungal disulfide protein revealed by constrained cold and heat unfolding, CEST-NMR experiments, and molecular dynamics calculations.

Authors:  Ádám Fizil; Zoltán Gáspári; Terézia Barna; Florentine Marx; Gyula Batta
Journal:  Chemistry       Date:  2015-02-12       Impact factor: 5.236

7.  Insights on protein thermal stability: a graph representation of molecular interactions.

Authors:  Mattia Miotto; Pier Paolo Olimpieri; Lorenzo Di Rienzo; Francesco Ambrosetti; Pietro Corsi; Rosalba Lepore; Gian Gaetano Tartaglia; Edoardo Milanetti
Journal:  Bioinformatics       Date:  2019-08-01       Impact factor: 6.937

8.  The Complex Energy Landscape of the Protein IscU.

Authors:  Jameson R Bothe; Marco Tonelli; Ibrahim K Ali; Ziqi Dai; Ronnie O Frederick; William M Westler; John L Markley
Journal:  Biophys J       Date:  2015-09-01       Impact factor: 4.033

9.  Towards a structural biology of the hydrophobic effect in protein folding.

Authors:  Carlo Camilloni; Daniela Bonetti; Angela Morrone; Rajanish Giri; Christopher M Dobson; Maurizio Brunori; Stefano Gianni; Michele Vendruscolo
Journal:  Sci Rep       Date:  2016-07-27       Impact factor: 4.379

10.  An optimized strategy to measure protein stability highlights differences between cold and hot unfolded states.

Authors:  Caterina Alfano; Domenico Sanfelice; Stephen R Martin; Annalisa Pastore; Piero Andrea Temussi
Journal:  Nat Commun       Date:  2017-05-18       Impact factor: 14.919

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