Literature DB >> 30638534

DNP-Assisted NMR Investigation of Proteins at Endogenous Levels in Cellular Milieu.

Whitney N Costello1, Yiling Xiao1, Kendra K Frederick2.   

Abstract

Structural investigations of biomolecules are typically confined to in vitro systems under extremely limited conditions. These investigations yield invaluable insights, but such experiments cannot capture important structural features imposed by cellular environments. Structural studies of proteins in their native contexts are not only possible using state-of-the-art sensitivity-enhanced (dynamic nuclear polarization, DNP) solid-state nuclear magnetic resonance (NMR) techniques, but these studies also demonstrate that the cellular context can and does have a dramatic influence on protein structure. In this chapter, we describe methods to prepare samples of isotopically labeled proteins at endogenous levels in cellular contexts alongside quality control methods to ensure that such samples accurately model important features of the cellular environment.
© 2019 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Amyloids; Dynamic nuclear polarization; In situ structural biology; In-cell NMR; NMR; Prions; Sup35

Mesh:

Substances:

Year:  2018        PMID: 30638534      PMCID: PMC8982140          DOI: 10.1016/bs.mie.2018.08.023

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


  49 in total

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3.  Hsp90 activator Aha1 drives production of pathological tau aggregates.

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5.  High frequency dynamic nuclear polarization.

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6.  Protein structure determination in living cells by in-cell NMR spectroscopy.

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Journal:  Nature       Date:  2009-03-05       Impact factor: 49.962

7.  Amyloid fibrils of the HET-s(218-289) prion form a beta solenoid with a triangular hydrophobic core.

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8.  Hsp70 chaperones as modulators of prion life cycle: novel effects of Ssa and Ssb on the Saccharomyces cerevisiae prion [PSI+].

Authors:  Kim D Allen; Renee D Wegrzyn; Tatiana A Chernova; Susanne Müller; Gary P Newnam; Peggy A Winslett; Kristin B Wittich; Keith D Wilkinson; Yury O Chernoff
Journal:  Genetics       Date:  2004-11-15       Impact factor: 4.562

9.  Distinct tau prion strains propagate in cells and mice and define different tauopathies.

Authors:  David W Sanders; Sarah K Kaufman; Sarah L DeVos; Apurwa M Sharma; Hilda Mirbaha; Aimin Li; Scarlett J Barker; Alex C Foley; Julian R Thorpe; Louise C Serpell; Timothy M Miller; Lea T Grinberg; William W Seeley; Marc I Diamond
Journal:  Neuron       Date:  2014-05-22       Impact factor: 17.173

10.  Cryo-EM structures of tau filaments from Alzheimer's disease.

Authors:  Anthony W P Fitzpatrick; Benjamin Falcon; Shaoda He; Alexey G Murzin; Garib Murshudov; Holly J Garringer; R Anthony Crowther; Bernardino Ghetti; Michel Goedert; Sjors H W Scheres
Journal:  Nature       Date:  2017-07-05       Impact factor: 49.962

View more
  7 in total

1.  Michler's hydrol blue elucidates structural differences in prion strains.

Authors:  Yiling Xiao; Sandra Rocha; Catherine C Kitts; Anna Reymer; Tamás Beke-Somfai; Kendra K Frederick; Bengt Nordén
Journal:  Proc Natl Acad Sci U S A       Date:  2020-11-09       Impact factor: 11.205

2.  Targetable Tetrazine-Based Dynamic Nuclear Polarization Agents for Biological Systems.

Authors:  Byung Joon Lim; Bryce E Ackermann; Galia T Debelouchina
Journal:  Chembiochem       Date:  2020-01-21       Impact factor: 3.164

3.  Stability of the nitroxide biradical AMUPol in intact and lysed mammalian cells.

Authors:  Rupam Ghosh; Rania Dumarieh; Yiling Xiao; Kendra K Frederick
Journal:  J Magn Reson       Date:  2022-01-31       Impact factor: 2.229

4.  TOAC spin-labeled peptides tailored for DNP-NMR studies in lipid membrane environments.

Authors:  Shiying Zhu; Ehsan Kachooei; Jeffrey R Harmer; Louise J Brown; Frances Separovic; Marc-Antoine Sani
Journal:  Biophys J       Date:  2021-09-02       Impact factor: 3.699

5.  In-Cell Sensitivity-Enhanced NMR of Intact Viable Mammalian Cells.

Authors:  Rupam Ghosh; Yiling Xiao; Jaka Kragelj; Kendra K Frederick
Journal:  J Am Chem Soc       Date:  2021-11-01       Impact factor: 15.419

Review 6.  Targeted DNP for biomolecular solid-state NMR.

Authors:  Diego Gauto; Ons Dakhlaoui; Ildefonso Marin-Montesinos; Sabine Hediger; Gaël De Paëpe
Journal:  Chem Sci       Date:  2021-03-23       Impact factor: 9.825

7.  In-Cell NMR of Intact Mammalian Cells Preserved with the Cryoprotectants DMSO and Glycerol Have Similar DNP Performance.

Authors:  Yiling Xiao; Rupam Ghosh; Kendra K Frederick
Journal:  Front Mol Biosci       Date:  2022-01-25
  7 in total

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