| Literature DB >> 30552317 |
Wei Guo1, Rodrigo Machado-Vieira2, Sanjay Mathew3, James W Murrough4, Dennis S Charney4, Matthew Grunebaum5, Maria A Oquendo6, Bashkim Kadriu7, Nirmala Akula8, Ioline Henter9, Peixiong Yuan8, Kathleen Merikangas10, Wayne Drevets11, Maura Furey11, J John Mann12, Francis J McMahon8, Carlos A Zarate7, Yin Yao Shugart13.
Abstract
Growing evidence suggests that the glutamatergic modulator ketamine has rapid antidepressant effects in treatment-resistant depressed subjects. The anticholinergic agent scopolamine has also shown promise as a rapid-acting antidepressant. This study applied genome-wide markers to investigate the role of genetic variants in predicting acute antidepressant response to both agents. The ketamine-treated sample included 157 unrelated European subjects with major depressive disorder (MDD) or bipolar disorder (BD). The scopolamine-treated sample comprised 37 unrelated European subjects diagnosed with either MDD or BD who had a current Major Depressive Episode (MDE), and had failed at least two adequate treatment trials for depression. Change in Montgomery-Asberg Depression Rating Scale (MADRS) or the 17-item Hamilton Depression Rating Scale (HAM-D) scale scores at day 1 (24 h post-treatment) was considered the primary outcome. Here, we conduct pilot genome-wide association study (GWAS) analyses to identify potential markers of ketamine response and dissociative side effects. Polygenic risk score analysis of SNPs ranked by the strength of their association with ketamine response was then calculated in order to assess whether common genetic markers from the ketamine study could predict response to scopolamine. Findings require replication in larger samples in light of low power of analyses of these small samples. Neverthless, these data provide a promising illustration of our future potential to identify genetic variants underlying rapid treatment response in mood disorders and may ultimately guide individual patient treatment selection in the future.Entities:
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Year: 2018 PMID: 30552317 PMCID: PMC6294748 DOI: 10.1038/s41398-018-0311-7
Source DB: PubMed Journal: Transl Psychiatry ISSN: 2158-3188 Impact factor: 6.222
Summary of statistical analyses
| Study | Infusion | Phenotype | Number of samples | Number of males | Number of females | Age range | Mean of age | SD of age |
|---|---|---|---|---|---|---|---|---|
| Antidepressant effects to ketamine | Ketamine | Depression Score (proportional change of MADRS or HAM-D at day 1) | 157 | 76 | 81 | 18–68 | 44.54 | 12.37 |
| Dissociation effects | Ketamine | change of CADSS_at 40 min | 90 | 46 | 44 | 20–65 | 43.44 | 12.41 |
| Antidepressant effects to scopolamine | Scopolamine | proportional change of MADRS at day 3 | 37 | 18 | 19 | 18–55 | 35.08 | 10.37 |
Genomic regions with p < 1×10−5 in the genome-wide association study (GWAS) on the antidepressant effects to ketamine
| CHR | SNP | BP | A1 | A2 | FRQ | INFO | BETA | SE |
| Gene (distance) | Protein (distance) |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 15 | rs55945116 | 85220113 | G | C | 0.7892 | 0.9432 | 23.3347 | 4.4624 | 5.93E-07 | SEC11A (0) | SEC11A (0) |
| 6 | rs112647602 | 54596755 | G | A | 0.7875 | 0.871 | −23.135 | 4.8666 | 4.82E-06 | KRASP1 (38626) | FAM83B (114814) |
| 4 | rs1846786 | 131919702 | T | G | 0.6951 | 0.8884 | −19.0893 | 4.0582 | 5.96E-06 | ||
| 22 | rs5997786 | 31254036 | C | T | 0.7995 | 0.8801 | 22.0315 | 4.6925 | 6.19E-06 | OSBP2 (0) | OSBP2 (0) |
| 2 | rs1524145 | 36122388 | G | T | 0.5 | 0.9682 | −17.3121 | 3.6948 | 6.44E-06 | MRPL50P1 (172180) | CRIM1 (460681) |
| 1 | rs6689906 | 116683540 | C | T | 0.9364 | 0.9278 | 35.6552 | 7.6306 | 6.80E-06 | MAB21L3 (29164) | |
| 1 | rs79749176 | 116461018 | T | C | 0.9468 | 0.9306 | 39.0894 | 8.4686 | 8.63E-06 | SLC22A15 (58101) | |
| 18 | rs75908125 | 5155552 | G | C | 0.864 | 1.0926 | 22.8451 | 4.9849 | 9.91E-06 | C18orf42 (0) | C18orf42 (0) |
Chr chromosome, SNP single-nucleotide polymorphism, A1 reference allele, A2 alternative allele, FRQ frequency of A1 allele in all samples, INFO information score of association, P p-values of GWAS, gene (distance) gene name and distance to the start site of nearest gene the SNP is located within, protein (distance) protein name and distance to nearest protein coding gene start site
Genomic regions with p < 1×10−5 in the genome-wide association study (GWAS) on the dissociation effects to ketamine
| CHR | SNP | BP | A1 | A2 | FRQ | INFO | BETA | SE |
| Gene (distance) | Protein (distance) |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 5 | rs17211233 | 80368763 | T | C | 0.9389 | 0.9349 | −26.9757 | 4.7058 | 1.90E-07 | RASGRF2 (0) | RASGRF2 (0) |
| 3 | rs1400237 | 76172232 | T | G | 0.0778 | 1.0706 | 21.4345 | 4.165 | 2.02E-06 | ROBO2 (0) | ROBO2 (0) |
| 9 | rs12236015 | 122817820 | C | T | 0.833 | 1.1168 | −13.9838 | 2.7763 | 3.10E-06 | ||
| 3 | rs9713737 | 76297174 | A | G | 0.244 | 0.9868 | 13.5351 | 2.7481 | 4.79E-06 | ROBO2 (0) | ROBO2 (0) |
| 2 | rs77987715 | 65955079 | A | G | 0.6547 | 1.0199 | −11.7152 | 2.3832 | 4.97E-06 | SPRED2 (295308) | |
| 4 | rs3900502 | 189869233 | C | A | 0.4877 | 0.8444 | −12.2832 | 2.5129 | 5.53E-06 | TRIML1 (808660) | |
| 11 | rs3018154 | 94420308 | C | T | 0.9111 | 1.0392 | −19.9461 | 4.0971 | 5.97E-06 | AMOTL1 (19289) | |
| 20 | rs1287071 | 5828375 | A | G | 0.7111 | 1.1346 | −11.3492 | 2.3349 | 6.15E-06 | C20orf196 (0) | C20orf196 (0) |
| 2 | rs11127199 | 29213561 | G | A | 0.6335 | 0.995 | 11.445 | 2.3621 | 6.53E-06 | FAM179A (0) | FAM179A (0) |
| 3 | rs4855976 | 76267368 | A | G | 0.0702 | 0.7747 | 23.7477 | 4.9636 | 8.24E-06 | ROBO2 (0) | ROBO2 (0) |
| 20 | rs11907319 | 42923299 | T | C | 0.8099 | 0.9753 | 14.3351 | 3.0037 | 8.63E-06 | FITM2 (16510) | FITM2 (16510) |
| 15 | rs4558394 | 98322385 | A | G | 0.85 | 0.9108 | −15.6495 | 3.2958 | 9.46E-06 | LINC00923 (0) | LINC00923 (0) |
Chr chromosome, SNP single-nucleotide polymorphism, A1 reference allele, A2 alternative allele, FRQ frequency of A1 allele in all samples, INFO information score of association, P p-values of GWAS, gene (distance) gene name and distance to the start site of nearest gene the SNP is located within, protein (distance) protein name and distance to nearest protein coding gene start site
Fig. 1Polygenic risk score (PRS) analysis.
The target sample comprised 37 subjects of European ancestry treated with scopolamine. The discovery sample comprised 157 subjects of European ancestry treated with ketamine. The variance explained in the target sample is based on risk scores derived from an aggregated sum of weighted single nucleotide polymorphism (SNP) risk allele effect sizes estimated from the discovery samples at seven significance thresholds (p < 0.01, 0.05, 0.1, 0.2, 0.3, 0.4, and 0.5). The y-axis indicates R2 value for the PRS fit model