Literature DB >> 25132410

Research review: Polygenic methods and their application to psychiatric traits.

Naomi R Wray1, Sang Hong Lee, Divya Mehta, Anna A E Vinkhuyzen, Frank Dudbridge, Christel M Middeldorp.   

Abstract

BACKGROUND: Despite evidence from twin and family studies for an important contribution of genetic factors to both childhood and adult onset psychiatric disorders, identifying robustly associated specific DNA variants has proved challenging. In the pregenomics era the genetic architecture (number, frequency and effect size of risk variants) of complex genetic disorders was unknown. Empirical evidence for the genetic architecture of psychiatric disorders is emerging from the genetic studies of the last 5 years. METHODS AND SCOPE: We review the methods investigating the polygenic nature of complex disorders. We provide mini-guides to genomic profile (or polygenic) risk scoring and to estimation of variance (or heritability) from common SNPs; a glossary of key terms is also provided. We review results of applications of the methods to psychiatric disorders and related traits and consider how these methods inform on missing heritability, hidden heritability and still-missing heritability.
FINDINGS: Genome-wide genotyping and sequencing studies are providing evidence that psychiatric disorders are truly polygenic, that is they have a genetic architecture of many genetic variants, including risk variants that are both common and rare in the population. Sample sizes published to date are mostly underpowered to detect effect sizes of the magnitude presented by nature, and these effect sizes may be constrained by the biological validity of the diagnostic constructs.
CONCLUSIONS: Increasing the sample size for genome wide association studies of psychiatric disorders will lead to the identification of more associated genetic variants, as already found for schizophrenia. These loci provide the starting point of functional analyses that might eventually lead to new prevention and treatment options and to improved biological validity of diagnostic constructs. Polygenic analyses will contribute further to our understanding of complex genetic traits as sample sizes increase and as sample resources become richer in phenotypic descriptors, both in terms of clinical symptoms and of nongenetic risk factors.
© 2014 Association for Child and Adolescent Mental Health.

Entities:  

Keywords:  Polygenic risk scoring; SNP analyses; disease traits; genome-wide association studies; heritability; psychiatric disorders

Mesh:

Year:  2014        PMID: 25132410     DOI: 10.1111/jcpp.12295

Source DB:  PubMed          Journal:  J Child Psychol Psychiatry        ISSN: 0021-9630            Impact factor:   8.982


  247 in total

1.  Polygenic Risk of Schizophrenia and Cognition in a Population-Based Survey of Older Adults.

Authors:  David T Liebers; Mehdi Pirooznia; Fayaz Seiffudin; Katherine L Musliner; Peter P Zandi; Fernando S Goes
Journal:  Schizophr Bull       Date:  2016-02-12       Impact factor: 9.306

Review 2.  Genetics of Bipolar Disorder: Recent Update and Future Directions.

Authors:  Fernando S Goes
Journal:  Psychiatr Clin North Am       Date:  2016-03

Review 3.  Genetics in child and adolescent psychiatry: methodological advances and conceptual issues.

Authors:  Sarah Hohmann; Nicoletta Adamo; Benjamin B Lahey; Stephen V Faraone; Tobias Banaschewski
Journal:  Eur Child Adolesc Psychiatry       Date:  2015-04-08       Impact factor: 4.785

Review 4.  Genetic Risk Scores.

Authors:  Robert P Igo; Tyler G Kinzy; Jessica N Cooke Bailey
Journal:  Curr Protoc Hum Genet       Date:  2019-12

5.  Genes, Environments, and Sex Differences in Alcohol Research.

Authors:  Jessica E Salvatore; Seung Bin Cho; Danielle M Dick
Journal:  J Stud Alcohol Drugs       Date:  2017-07       Impact factor: 2.582

6.  Examining the independent and joint effects of molecular genetic liability and environmental exposures in schizophrenia: results from the EUGEI study.

Authors:  Sinan Guloksuz; Lotta-Katrin Pries; Philippe Delespaul; Gunter Kenis; Jurjen J Luykx; Bochao D Lin; Alexander L Richards; Berna Akdede; Tolga Binbay; Vesile Altınyazar; Berna Yalınçetin; Güvem Gümüş-Akay; Burçin Cihan; Haldun Soygür; Halis Ulaş; EylemŞahin Cankurtaran; Semra Ulusoy Kaymak; Marina M Mihaljevic; Sanja Andric Petrovic; Tijana Mirjanic; Miguel Bernardo; Bibiana Cabrera; Julio Bobes; Pilar A Saiz; María Paz García-Portilla; Julio Sanjuan; Eduardo J Aguilar; José Luis Santos; Estela Jiménez-López; Manuel Arrojo; Angel Carracedo; Gonzalo López; Javier González-Peñas; Mara Parellada; Nadja P Maric; Cem Atbaşog Lu; Alp Ucok; Köksal Alptekin; Meram Can Saka; Celso Arango; Michael O'Donovan; Bart P F Rutten; Jim van Os
Journal:  World Psychiatry       Date:  2019-06       Impact factor: 49.548

7.  Neuropsychiatric disease-associated genetic variants of the dopamine transporter display heterogeneous molecular phenotypes.

Authors:  Freja Herborg; Thorvald F Andreassen; Frida Berlin; Claus J Loland; Ulrik Gether
Journal:  J Biol Chem       Date:  2018-03-20       Impact factor: 5.157

8.  Prediction of Schizophrenia Diagnosis by Integration of Genetically Correlated Conditions and Traits.

Authors:  Jingchun Chen; Jian-Shing Wu; Travis Mize; Dandan Shui; Xiangning Chen
Journal:  J Neuroimmune Pharmacol       Date:  2018-10-01       Impact factor: 4.147

9.  Alcohol Metabolizing Polygenic Risk for Alcohol Consumption in European American College Students.

Authors:  Nathaniel S Thomas; Amy Adkins; Fazil Aliev; Alexis C Edwards; Bradley T Webb; E Clare Tiarsmith; Kenneth S Kendler; Danielle M Dick; Karen G Chartier
Journal:  J Stud Alcohol Drugs       Date:  2018-07       Impact factor: 2.582

10.  The Role of Emergence in Genetically Informed Relationships Research: A Methodological Analysis.

Authors:  Jessica E Salvatore; Kenneth S Kendler
Journal:  Behav Genet       Date:  2018-10-24       Impact factor: 2.805

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