Literature DB >> 31146125

Regulation of neuronal connectivity in the mammalian brain by chromatin remodeling.

Jared V Goodman1, Azad Bonni2.   

Abstract

Precise temporal and spatial control of gene expression is essential for brain development. Besides DNA sequence-specific transcription factors, epigenetic factors play an integral role in the control of gene expression in neurons. Among epigenetic mechanisms, chromatin remodeling enzymes have emerged as essential to the control of neural circuit assembly and function in the brain. Here, we review recent studies on the roles and mechanisms of the chromodomain-helicase-DNA-binding (Chd) family of chromatin remodeling enzymes in the regulation of neuronal morphogenesis and connectivity in the mammalian brain. We explore the field through the lens of Chd3, Chd4, and Chd5 proteins, which incorporate into the nucleosome remodeling and deacetylase (NuRD) complex, and the related proteins Chd7 and Chd8, implicated in the pathogenesis of intellectual disability and autism spectrum disorders. These studies have advanced our understanding of the mechanisms that regulate neuronal connectivity in brain development and neurodevelopmental disorders of cognition.
Copyright © 2019 Elsevier Ltd. All rights reserved.

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Year:  2019        PMID: 31146125      PMCID: PMC6879819          DOI: 10.1016/j.conb.2019.04.010

Source DB:  PubMed          Journal:  Curr Opin Neurobiol        ISSN: 0959-4388            Impact factor:   6.627


  84 in total

1.  Chd8 Mutation Leads to Autistic-like Behaviors and Impaired Striatal Circuits.

Authors:  Randall J Platt; Yang Zhou; Ian M Slaymaker; Ashwin S Shetty; Niels R Weisbach; Jin-Ah Kim; Jitendra Sharma; Mitul Desai; Sabina Sood; Hannah R Kempton; Gerald R Crabtree; Guoping Feng; Feng Zhang
Journal:  Cell Rep       Date:  2017-04-11       Impact factor: 9.423

2.  The dermatomyositis-specific autoantigen Mi2 is a component of a complex containing histone deacetylase and nucleosome remodeling activities.

Authors:  Y Zhang; G LeRoy; H P Seelig; W S Lane; D Reinberg
Journal:  Cell       Date:  1998-10-16       Impact factor: 41.582

Review 3.  Chromatin Regulation of Neuronal Maturation and Plasticity.

Authors:  David A Gallegos; Urann Chan; Liang-Fu Chen; Anne E West
Journal:  Trends Neurosci       Date:  2018-03-09       Impact factor: 13.837

4.  KMT2A and KMT2B Mediate Memory Function by Affecting Distinct Genomic Regions.

Authors:  Cemil Kerimoglu; M Sadman Sakib; Gaurav Jain; Eva Benito; Susanne Burkhardt; Vincenzo Capece; Lalit Kaurani; Rashi Halder; Roberto Carlos Agís-Balboa; Roman Stilling; Hendrik Urbanke; Andrea Kranz; A Francis Stewart; Andre Fischer
Journal:  Cell Rep       Date:  2017-07-18       Impact factor: 9.423

5.  CHD8 haploinsufficiency results in autistic-like phenotypes in mice.

Authors:  Yuta Katayama; Masaaki Nishiyama; Hirotaka Shoji; Yasuyuki Ohkawa; Atsuki Kawamura; Tetsuya Sato; Mikita Suyama; Toru Takumi; Tsuyoshi Miyakawa; Keiichi I Nakayama
Journal:  Nature       Date:  2016-09-07       Impact factor: 49.962

6.  Patterns and rates of exonic de novo mutations in autism spectrum disorders.

Authors:  Benjamin M Neale; Yan Kou; Li Liu; Avi Ma'ayan; Kaitlin E Samocha; Aniko Sabo; Chiao-Feng Lin; Christine Stevens; Li-San Wang; Vladimir Makarov; Paz Polak; Seungtai Yoon; Jared Maguire; Emily L Crawford; Nicholas G Campbell; Evan T Geller; Otto Valladares; Chad Schafer; Han Liu; Tuo Zhao; Guiqing Cai; Jayon Lihm; Ruth Dannenfelser; Omar Jabado; Zuleyma Peralta; Uma Nagaswamy; Donna Muzny; Jeffrey G Reid; Irene Newsham; Yuanqing Wu; Lora Lewis; Yi Han; Benjamin F Voight; Elaine Lim; Elizabeth Rossin; Andrew Kirby; Jason Flannick; Menachem Fromer; Khalid Shakir; Tim Fennell; Kiran Garimella; Eric Banks; Ryan Poplin; Stacey Gabriel; Mark DePristo; Jack R Wimbish; Braden E Boone; Shawn E Levy; Catalina Betancur; Shamil Sunyaev; Eric Boerwinkle; Joseph D Buxbaum; Edwin H Cook; Bernie Devlin; Richard A Gibbs; Kathryn Roeder; Gerard D Schellenberg; James S Sutcliffe; Mark J Daly
Journal:  Nature       Date:  2012-04-04       Impact factor: 49.962

7.  Sporadic autism exomes reveal a highly interconnected protein network of de novo mutations.

Authors:  Brian J O'Roak; Laura Vives; Santhosh Girirajan; Emre Karakoc; Niklas Krumm; Bradley P Coe; Roie Levy; Arthur Ko; Choli Lee; Joshua D Smith; Emily H Turner; Ian B Stanaway; Benjamin Vernot; Maika Malig; Carl Baker; Beau Reilly; Joshua M Akey; Elhanan Borenstein; Mark J Rieder; Deborah A Nickerson; Raphael Bernier; Jay Shendure; Evan E Eichler
Journal:  Nature       Date:  2012-04-04       Impact factor: 49.962

8.  CRISPR/Cas9-mediated heterozygous knockout of the autism gene CHD8 and characterization of its transcriptional networks in cerebral organoids derived from iPS cells.

Authors:  Ping Wang; Ryan Mokhtari; Erika Pedrosa; Michael Kirschenbaum; Can Bayrak; Deyou Zheng; Herbert M Lachman
Journal:  Mol Autism       Date:  2017-03-20       Impact factor: 7.509

9.  Genome-wide nucleosome specificity and function of chromatin remodellers in ES cells.

Authors:  Maud de Dieuleveult; Kuangyu Yen; Isabelle Hmitou; Arnaud Depaux; Fayçal Boussouar; Daria Bou Dargham; Sylvie Jounier; Hélène Humbertclaude; Florence Ribierre; Céline Baulard; Nina P Farrell; Bongsoo Park; Céline Keime; Lucie Carrière; Soizick Berlivet; Marta Gut; Ivo Gut; Michel Werner; Jean-François Deleuze; Robert Olaso; Jean-Christophe Aude; Sophie Chantalat; B Franklin Pugh; Matthieu Gérard
Journal:  Nature       Date:  2016-01-27       Impact factor: 49.962

10.  Oligodendrocyte precursor survival and differentiation requires chromatin remodeling by Chd7 and Chd8.

Authors:  Corentine Marie; Adrien Clavairoly; Magali Frah; Hatem Hmidan; Jun Yan; Chuntao Zhao; Juliette Van Steenwinckel; Romain Daveau; Bernard Zalc; Bassem Hassan; Jean-Léon Thomas; Pierre Gressens; Philippe Ravassard; Ivan Moszer; Donna M Martin; Q Richard Lu; Carlos Parras
Journal:  Proc Natl Acad Sci U S A       Date:  2018-08-14       Impact factor: 11.205

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  20 in total

Review 1.  AKAP Signaling Islands: Venues for Precision Pharmacology.

Authors:  Mitchell H Omar; John D Scott
Journal:  Trends Pharmacol Sci       Date:  2020-10-17       Impact factor: 14.819

2.  Postmitotic accumulation of histone variant H3.3 in new cortical neurons establishes neuronal chromatin, transcriptome, and identity.

Authors:  Owen H Funk; Yaman Qalieh; Daniel Z Doyle; Mandy M Lam; Kenneth Y Kwan
Journal:  Proc Natl Acad Sci U S A       Date:  2022-08-05       Impact factor: 12.779

Review 3.  Histone deacetylase-3: Friend and foe of the brain.

Authors:  Santosh R D'Mello
Journal:  Exp Biol Med (Maywood)       Date:  2020-06-02

Review 4.  Resolving the Synaptic versus Developmental Dichotomy of Autism Risk Genes.

Authors:  Whitney E Heavner; Stephen E P Smith
Journal:  Trends Neurosci       Date:  2020-02-22       Impact factor: 13.837

5.  APC7 mediates ubiquitin signaling in constitutive heterochromatin in the developing mammalian brain.

Authors:  Cole J Ferguson; Olivia Urso; Tatyana Bodrug; Brandon M Gassaway; Edmond R Watson; Jesuraj R Prabu; Pablo Lara-Gonzalez; Raquel C Martinez-Chacin; Dennis Y Wu; Karlla W Brigatti; Erik G Puffenberger; Cora M Taylor; Barbara Haas-Givler; Robert N Jinks; Kevin A Strauss; Arshad Desai; Harrison W Gabel; Steven P Gygi; Brenda A Schulman; Nicholas G Brown; Azad Bonni
Journal:  Mol Cell       Date:  2021-12-22       Impact factor: 17.970

6.  The chromatin remodeling enzyme Chd4 regulates genome architecture in the mouse brain.

Authors:  Tomoko Yamada; Yue Yang; Jared V Goodman; Lingchun Kong; Dennis Y Wu; Guoyan Zhao; Harrison W Gabel; Azad Bonni
Journal:  Nat Commun       Date:  2020-07-09       Impact factor: 14.919

Review 7.  Involvement of Thyroid Hormones in Brain Development and Cancer.

Authors:  Gabriella Schiera; Carlo Maria Di Liegro; Italia Di Liegro
Journal:  Cancers (Basel)       Date:  2021-05-30       Impact factor: 6.639

Review 8.  An "Omic" Overview of Fragile X Syndrome.

Authors:  Olivier Dionne; François Corbin
Journal:  Biology (Basel)       Date:  2021-05-13

9.  CHD8 dosage regulates transcription in pluripotency and early murine neural differentiation.

Authors:  Sabina Sood; Christopher M Weber; H Courtney Hodges; Andrey Krokhotin; Aryaman Shalizi; Gerald R Crabtree
Journal:  Proc Natl Acad Sci U S A       Date:  2020-08-24       Impact factor: 12.779

10.  FMRP Control of Ribosome Translocation Promotes Chromatin Modifications and Alternative Splicing of Neuronal Genes Linked to Autism.

Authors:  Sneha Shah; Gemma Molinaro; Botao Liu; Ruijia Wang; Kimberly M Huber; Joel D Richter
Journal:  Cell Rep       Date:  2020-03-31       Impact factor: 9.423

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