Literature DB >> 33551235

Histone Tail Conformations: A Fuzzy Affair with DNA.

Mohamed Ghoneim1, Harrison A Fuchs1, Catherine A Musselman2.   

Abstract

The core histone tails are critical in chromatin structure and signaling. Studies over the past several decades have provided a wealth of information on the histone tails and their interaction with chromatin factors. However, the conformation of the histone tails in a chromatin relevant context has remained elusive. Only recently has enough evidence emerged to start to build a structural model of the tails in the context of nucleosomes and nucleosome arrays. Here, we review these studies and propose that the histone tails adopt a high-affinity fuzzy complex with DNA, characterized by robust but dynamic association. Furthermore, we discuss how these DNA-bound conformational ensembles promote distinct chromatin structure and signaling, and that their fuzzy nature is important in transitioning between functional states.
Copyright © 2021 The Authors. Published by Elsevier Ltd.. All rights reserved.

Entities:  

Keywords:  chromatin; intrinsically disordered regions; nucleosome; post-translational modification

Year:  2021        PMID: 33551235      PMCID: PMC8195839          DOI: 10.1016/j.tibs.2020.12.012

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  115 in total

1.  DNA sequence-dependent contributions of core histone tails to nucleosome stability: differential effects of acetylation and proteolytic tail removal.

Authors:  H R Widlund; J M Vitolo; C Thiriet; J J Hayes
Journal:  Biochemistry       Date:  2000-04-04       Impact factor: 3.162

Review 2.  Conformational dynamics of the chromatin fiber in solution: determinants, mechanisms, and functions.

Authors:  Jeffrey C Hansen
Journal:  Annu Rev Biophys Biomol Struct       Date:  2001-10-25

Review 3.  Fuzzy complexes: Specific binding without complete folding.

Authors:  Rashmi Sharma; Zsolt Raduly; Marton Miskei; Monika Fuxreiter
Journal:  FEBS Lett       Date:  2015-07-27       Impact factor: 4.124

Review 4.  Regulation of nucleosome dynamics by histone modifications.

Authors:  Gabriel E Zentner; Steven Henikoff
Journal:  Nat Struct Mol Biol       Date:  2013-03       Impact factor: 15.369

Review 5.  A Structural Perspective on Readout of Epigenetic Histone and DNA Methylation Marks.

Authors:  Dinshaw J Patel
Journal:  Cold Spring Harb Perspect Biol       Date:  2016-03-01       Impact factor: 10.005

Review 6.  Fuzziness in Protein Interactions-A Historical Perspective.

Authors:  Monika Fuxreiter
Journal:  J Mol Biol       Date:  2018-02-23       Impact factor: 5.469

7.  Dynamics of the nucleosomal histone H3 N-terminal tail revealed by high precision single-molecule FRET.

Authors:  Kathrin Lehmann; Suren Felekyan; Ralf Kühnemuth; Mykola Dimura; Katalin Tóth; Claus A M Seidel; Jörg Langowski
Journal:  Nucleic Acids Res       Date:  2020-02-20       Impact factor: 16.971

8.  Acetylation mimics within individual core histone tail domains indicate distinct roles in regulating the stability of higher-order chromatin structure.

Authors:  Xiaodong Wang; Jeffrey J Hayes
Journal:  Mol Cell Biol       Date:  2007-10-15       Impact factor: 4.272

9.  Accessibility of the histone H3 tail in the nucleosome for binding of paired readers.

Authors:  Jovylyn Gatchalian; Xiaodong Wang; Jinzen Ikebe; Khan L Cox; Adam H Tencer; Yi Zhang; Nathaniel L Burge; Luo Di; Matthew D Gibson; Catherine A Musselman; Michael G Poirier; Hidetoshi Kono; Jeffrey J Hayes; Tatiana G Kutateladze
Journal:  Nat Commun       Date:  2017-11-14       Impact factor: 14.919

10.  Histone acetylation dependent energy landscapes in tri-nucleosome revealed by residue-resolved molecular simulations.

Authors:  Le Chang; Shoji Takada
Journal:  Sci Rep       Date:  2016-10-04       Impact factor: 4.379

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  12 in total

1.  Histone H3 and H4 tails play an important role in nucleosome phase separation.

Authors:  Erin F Hammonds; Megan Cleland Harwig; Emeleeta A Paintsil; Emma A Tillison; R Blake Hill; Emma A Morrison
Journal:  Biophys Chem       Date:  2022-02-02       Impact factor: 2.352

Review 2.  Visualizing Conformational Ensembles of the Nucleosome by NMR.

Authors:  Catherine A Musselman; Tatiana G Kutateladze
Journal:  ACS Chem Biol       Date:  2022-02-23       Impact factor: 4.634

Review 3.  Is There a Histone Code for Cellular Quiescence?

Authors:  Kenya Bonitto; Kirthana Sarathy; Kaiser Atai; Mithun Mitra; Hilary A Coller
Journal:  Front Cell Dev Biol       Date:  2021-10-29

4.  The dCypher Approach to Interrogate Chromatin Reader Activity Against Posttranslational Modification-Defined Histone Peptides and Nucleosomes.

Authors:  Matthew R Marunde; Irina K Popova; Ellen N Weinzapfel; Michael-C Keogh
Journal:  Methods Mol Biol       Date:  2022

5.  Nucleosome composition regulates the histone H3 tail conformational ensemble and accessibility.

Authors:  Emma A Morrison; Lokesh Baweja; Michael G Poirier; Jeff Wereszczynski; Catherine A Musselman
Journal:  Nucleic Acids Res       Date:  2021-05-07       Impact factor: 19.160

6.  Assessing the in vitro Binding Specificity of Histone Modification Reader Proteins Using Histone Peptide Arrays.

Authors:  Mark W Soo; Arneet L Saltzman
Journal:  Bio Protoc       Date:  2021-09-20

7.  Methylation of recombinant mononucleosomes by DNMT3A demonstrates efficient linker DNA methylation and a role of H3K36me3.

Authors:  Alexander Bröhm; Tabea Schoch; Michael Dukatz; Nora Graf; Franziska Dorscht; Evelin Mantai; Sabrina Adam; Pavel Bashtrykov; Albert Jeltsch
Journal:  Commun Biol       Date:  2022-03-02

8.  FACT modulates the conformations of histone H2A and H2B N-terminal tails within nucleosomes.

Authors:  Yasuo Tsunaka; Hideaki Ohtomo; Yoshifumi Nishimura
Journal:  Commun Biol       Date:  2022-08-13

Review 9.  Catching Nucleosome by Its Decorated Tails Determines Its Functional States.

Authors:  Parveen Sehrawat; Rahul Shobhawat; Ashutosh Kumar
Journal:  Front Genet       Date:  2022-07-14       Impact factor: 4.772

Review 10.  The critical roles of histone deacetylase 3 in the pathogenesis of solid organ injury.

Authors:  Li Ning; Xiong Rui; Wang Bo; Geng Qing
Journal:  Cell Death Dis       Date:  2021-07-23       Impact factor: 8.469

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