Literature DB >> 30531939

Genome editing in plants by engineered CRISPR-Cas9 recognizing NG PAM.

Masaki Endo1, Masafumi Mikami1,2, Akira Endo1,3, Hidetaka Kaya1,4, Takeshi Itoh5, Hiroshi Nishimasu6, Osamu Nureki6, Seiichi Toki7,8,9.   

Abstract

Streptococcus pyogenes Cas9 (SpCas9) is widely used for genome editing and requires NGG as a protospacer adjacent motif (PAM). Here, we show that the engineered SpCas9 (SpCas9-NGv1) can efficiently mutagenize endogenous target sites with NG PAMs in the rice and Arabidopsis genomes. Furthermore, we demonstrate that the SpCas9-NGv1 nickase fused to cytidine deaminase mediates C-to-T substitutions near the 5' end of the target sequence.

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Year:  2018        PMID: 30531939     DOI: 10.1038/s41477-018-0321-8

Source DB:  PubMed          Journal:  Nat Plants        ISSN: 2055-0278            Impact factor:   15.793


  43 in total

1.  CRISPR-Act3.0 for highly efficient multiplexed gene activation in plants.

Authors:  Changtian Pan; Xincheng Wu; Kasey Markel; Aimee A Malzahn; Neil Kundagrami; Simon Sretenovic; Yingxiao Zhang; Yanhao Cheng; Patrick M Shih; Yiping Qi
Journal:  Nat Plants       Date:  2021-06-24       Impact factor: 15.793

Review 2.  Base Editors: Modular Tools for the Introduction of Point Mutations in Living Cells.

Authors:  Mallory Evanoff; Alexis C Komor
Journal:  Emerg Top Life Sci       Date:  2019-09-10

3.  PAM-less plant genome editing using a CRISPR-SpRY toolbox.

Authors:  Qiurong Ren; Simon Sretenovic; Shishi Liu; Xu Tang; Lan Huang; Yao He; Li Liu; Yachong Guo; Zhaohui Zhong; Guanqing Liu; Yanhao Cheng; Xuelian Zheng; Changtian Pan; Desuo Yin; Yingxiao Zhang; Wanfeng Li; Liwang Qi; Chenghao Li; Yiping Qi; Yong Zhang
Journal:  Nat Plants       Date:  2021-01-04       Impact factor: 15.793

Review 4.  Recent advancements in CRISPR/Cas technology for accelerated crop improvement.

Authors:  Debajit Das; Dhanawantari L Singha; Ricky Raj Paswan; Naimisha Chowdhury; Monica Sharma; Palakolanu Sudhakar Reddy; Channakeshavaiah Chikkaputtaiah
Journal:  Planta       Date:  2022-04-23       Impact factor: 4.116

5.  The Solanum tuberosum GBSSI gene: a target for assessing gene and base editing in tetraploid potato.

Authors:  Florian Veillet; Laura Chauvin; Marie-Paule Kermarrec; François Sevestre; Mathilde Merrer; Zoé Terret; Nicolas Szydlowski; Pierre Devaux; Jean-Luc Gallois; Jean-Eric Chauvin
Journal:  Plant Cell Rep       Date:  2019-05-17       Impact factor: 4.570

6.  Manipulating gene translation in plants by CRISPR-Cas9-mediated genome editing of upstream open reading frames.

Authors:  Xiaomin Si; Huawei Zhang; Yanpeng Wang; Kunling Chen; Caixia Gao
Journal:  Nat Protoc       Date:  2020-01-08       Impact factor: 13.491

Review 7.  Sequence modification on demand: search and replace tools for precise gene editing in plants.

Authors:  Tomáš Čermák
Journal:  Transgenic Res       Date:  2021-06-04       Impact factor: 2.788

8.  Efficient base editing in tomato using a highly expressed transient system.

Authors:  Shaoze Yuan; Shunsuke Kawasaki; Islam M Y Abdellatif; Keiji Nishida; Akihiko Kondo; Tohru Ariizumi; Hiroshi Ezura; Kenji Miura
Journal:  Plant Cell Rep       Date:  2021-02-07       Impact factor: 4.570

Review 9.  Base editing in rice: current progress, advances, limitations, and future perspectives.

Authors:  Rajesh Yarra; Lingaraj Sahoo
Journal:  Plant Cell Rep       Date:  2021-01-10       Impact factor: 4.570

10.  Precision genome editing using cytosine and adenine base editors in mammalian cells.

Authors:  Tony P Huang; Gregory A Newby; David R Liu
Journal:  Nat Protoc       Date:  2021-01-18       Impact factor: 13.491

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