Literature DB >> 32270050

Base Editors: Modular Tools for the Introduction of Point Mutations in Living Cells.

Mallory Evanoff1, Alexis C Komor1.   

Abstract

Base editors are a new family of programmable genome editing tools that fuse ssDNA (single stranded DNA) modifying enzymes to catalytically inactive CRISPR-associated (Cas) endonucleases to induce highly efficient single base changes. With dozens of base editors now reported, it is apparent that these tools are highly modular; many combinations of ssDNA modifying enzymes and Cas proteins have resulted in a variety of base editors, each with its own unique properties and potential uses. In this perspective, we describe currently available base editors, highlighting their modular nature and describing the various options available for each component. Furthermore, we briefly discuss applications in synthetic biology and genome engineering where base editors have presented unique advantages over alternative techniques.

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Year:  2019        PMID: 32270050      PMCID: PMC7141416          DOI: 10.1042/etls20190088

Source DB:  PubMed          Journal:  Emerg Top Life Sci        ISSN: 2397-8554


  61 in total

1.  CRISPR-STOP: gene silencing through base-editing-induced nonsense mutations.

Authors:  Cem Kuscu; Mahmut Parlak; Turan Tufan; Jiekun Yang; Karol Szlachta; Xiaolong Wei; Rashad Mammadov; Mazhar Adli
Journal:  Nat Methods       Date:  2017-06-05       Impact factor: 28.547

Review 2.  A guide to genome engineering with programmable nucleases.

Authors:  Hyongbum Kim; Jin-Soo Kim
Journal:  Nat Rev Genet       Date:  2014-04-02       Impact factor: 53.242

3.  Directed evolution using dCas9-targeted somatic hypermutation in mammalian cells.

Authors:  Gaelen T Hess; Laure Frésard; Kyuho Han; Cameron H Lee; Amy Li; Karlene A Cimprich; Stephen B Montgomery; Michael C Bassik
Journal:  Nat Methods       Date:  2016-10-31       Impact factor: 28.547

4.  Targeted AID-mediated mutagenesis (TAM) enables efficient genomic diversification in mammalian cells.

Authors:  Yunqing Ma; Jiayuan Zhang; Weijie Yin; Zhenchao Zhang; Yan Song; Xing Chang
Journal:  Nat Methods       Date:  2016-10-10       Impact factor: 28.547

Review 5.  CRISPR-Cas systems for editing, regulating and targeting genomes.

Authors:  Jeffry D Sander; J Keith Joung
Journal:  Nat Biotechnol       Date:  2014-03-02       Impact factor: 54.908

6.  Improving cytidine and adenine base editors by expression optimization and ancestral reconstruction.

Authors:  Luke W Koblan; Jordan L Doman; Christopher Wilson; Jonathan M Levy; Tristan Tay; Gregory A Newby; Juan Pablo Maianti; Aditya Raguram; David R Liu
Journal:  Nat Biotechnol       Date:  2018-05-29       Impact factor: 54.908

7.  A panel of eGFP reporters for single base editing by APOBEC-Cas9 editosome complexes.

Authors:  A St Martin; D J Salamango; A A Serebrenik; N M Shaban; W L Brown; R S Harris
Journal:  Sci Rep       Date:  2019-01-24       Impact factor: 4.379

8.  Expanding the base editing scope in rice by using Cas9 variants.

Authors:  Kai Hua; Xiaoping Tao; Jian-Kang Zhu
Journal:  Plant Biotechnol J       Date:  2018-10-05       Impact factor: 9.803

9.  High-efficient and precise base editing of C•G to T•A in the allotetraploid cotton (Gossypium hirsutum) genome using a modified CRISPR/Cas9 system.

Authors:  Lei Qin; Jianying Li; Qiongqiong Wang; Zhongping Xu; Lin Sun; Muna Alariqi; Hakim Manghwar; Guanyin Wang; Bo Li; Xiao Ding; Hangping Rui; Huimei Huang; Tianliang Lu; Keith Lindsey; Henry Daniell; Xianlong Zhang; Shuangxia Jin
Journal:  Plant Biotechnol J       Date:  2019-06-07       Impact factor: 9.803

10.  Highly efficient base editing in bacteria using a Cas9-cytidine deaminase fusion.

Authors:  Ke Zheng; Yang Wang; Na Li; Fang-Fang Jiang; Chang-Xian Wu; Fang Liu; Huan-Chun Chen; Zheng-Fei Liu
Journal:  Commun Biol       Date:  2018-04-19
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  2 in total

1.  A blueprint for gene function analysis through Base Editing in the model plant Physcomitrium (Physcomitrella) patens.

Authors:  Anouchka Guyon-Debast; Alessandro Alboresi; Zoé Terret; Florence Charlot; Floriane Berthier; Pol Vendrell-Mir; Josep M Casacuberta; Florian Veillet; Tomas Morosinotto; Jean-Luc Gallois; Fabien Nogué
Journal:  New Phytol       Date:  2021-02-06       Impact factor: 10.151

Review 2.  The Scope of Pathogenic ABCA4 Mutations Targetable by CRISPR DNA Base Editing Systems-A Systematic Review.

Authors:  Elena Piotter; Michelle E McClements; Robert E MacLaren
Journal:  Front Genet       Date:  2022-01-27       Impact factor: 4.599

  2 in total

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