Literature DB >> 33423074

Base editing in rice: current progress, advances, limitations, and future perspectives.

Rajesh Yarra1, Lingaraj Sahoo2.   

Abstract

KEY MESSAGE: Base editing is one of the promising genome editing tools for generating single-nucleotide changes in rice genome. Rice (Oryza sativa L.) is an important staple food crop, feeding half of the population around the globe. Developing new rice varieties with desirable agronomic traits is necessary for sustaining global food security. The use of genome editing technologies for developing rice varieties is pre-requisite in the present scenario. Among the genome editing technologies developed for rice crop improvement, base editing technology has emerged as an efficient and reliable tool for precise genome editing in rice plants. Base editing technology utilizes either adenosine or cytidine base editor for precise editing at the target region. A base editor (adenosine or cytidine) is a fusion of catalytically inactive CRISPR/Cas9 domain and adenosine or cytidine deaminase domain. In this review, authors have discussed the different adenine and cytosine base editors developed so far for precise genome editing of rice via base editing technology. We address the current progress, advances, limitations, as well as future perspectives of the base editing technology for rice crop improvement.

Entities:  

Keywords:  ABE; Base editors; CBE; CRISPR; Cas9

Mesh:

Substances:

Year:  2021        PMID: 33423074     DOI: 10.1007/s00299-020-02656-3

Source DB:  PubMed          Journal:  Plant Cell Rep        ISSN: 0721-7714            Impact factor:   4.570


  31 in total

1.  Regulation of OsSPL14 by OsmiR156 defines ideal plant architecture in rice.

Authors:  Yongqing Jiao; Yonghong Wang; Dawei Xue; Jing Wang; Meixian Yan; Guifu Liu; Guojun Dong; Dali Zeng; Zefu Lu; Xudong Zhu; Qian Qian; Jiayang Li
Journal:  Nat Genet       Date:  2010-05-23       Impact factor: 38.330

2.  Cytosine, but not adenine, base editors induce genome-wide off-target mutations in rice.

Authors:  Shuai Jin; Yuan Zong; Qiang Gao; Zixu Zhu; Yanpeng Wang; Peng Qin; Chengzhi Liang; Daowen Wang; Jin-Long Qiu; Feng Zhang; Caixia Gao
Journal:  Science       Date:  2019-02-28       Impact factor: 47.728

3.  Precise A·T to G·C Base Editing in the Rice Genome.

Authors:  Kai Hua; Xiaoping Tao; Fengtong Yuan; Dong Wang; Jian-Kang Zhu
Journal:  Mol Plant       Date:  2018-02-21       Impact factor: 13.164

4.  Genome editing in plants by engineered CRISPR-Cas9 recognizing NG PAM.

Authors:  Masaki Endo; Masafumi Mikami; Akira Endo; Hidetaka Kaya; Takeshi Itoh; Hiroshi Nishimasu; Osamu Nureki; Seiichi Toki
Journal:  Nat Plants       Date:  2018-12-10       Impact factor: 15.793

5.  Programmable base editing of A•T to G•C in genomic DNA without DNA cleavage.

Authors:  Nicole M Gaudelli; Alexis C Komor; Holly A Rees; Michael S Packer; Ahmed H Badran; David I Bryson; David R Liu
Journal:  Nature       Date:  2017-10-25       Impact factor: 49.962

Review 6.  CRISPR for Crop Improvement: An Update Review.

Authors:  Deepa Jaganathan; Karthikeyan Ramasamy; Gothandapani Sellamuthu; Shilpha Jayabalan; Gayatri Venkataraman
Journal:  Front Plant Sci       Date:  2018-07-17       Impact factor: 5.753

7.  Expanding the base editing scope in rice by using Cas9 variants.

Authors:  Kai Hua; Xiaoping Tao; Jian-Kang Zhu
Journal:  Plant Biotechnol J       Date:  2018-10-05       Impact factor: 9.803

8.  Simplified adenine base editors improve adenine base editing efficiency in rice.

Authors:  Kai Hua; Xiaoping Tao; Weiyi Liang; Zhaoxia Zhang; Runyu Gou; Jian-Kang Zhu
Journal:  Plant Biotechnol J       Date:  2019-09-19       Impact factor: 9.803

Review 9.  CRISPR base editors: genome editing without double-stranded breaks.

Authors:  Ayman Eid; Sahar Alshareef; Magdy M Mahfouz
Journal:  Biochem J       Date:  2018-06-11       Impact factor: 3.857

10.  Evolved Cas9 variants with broad PAM compatibility and high DNA specificity.

Authors:  Johnny H Hu; Shannon M Miller; Maarten H Geurts; Weixin Tang; Liwei Chen; Ning Sun; Christina M Zeina; Xue Gao; Holly A Rees; Zhi Lin; David R Liu
Journal:  Nature       Date:  2018-02-28       Impact factor: 49.962

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  2 in total

1.  An alanine to valine mutation of glutamyl-tRNA reductase enhances 5-aminolevulinic acid synthesis in rice.

Authors:  Meng Jiang; Shang Dai; Yun-Chao Zheng; Rui-Qing Li; Yuan-Yuan Tan; Gang Pan; Ian Max Møller; Shi-Yong Song; Jian-Zhong Huang; Qing-Yao Shu
Journal:  Theor Appl Genet       Date:  2022-07-02       Impact factor: 5.574

Review 2.  Genome Engineering Technology for Durable Disease Resistance: Recent Progress and Future Outlooks for Sustainable Agriculture.

Authors:  Qurban Ali; Chenjie Yu; Amjad Hussain; Mohsin Ali; Sunny Ahmar; Muhammad Aamir Sohail; Muhammad Riaz; Muhammad Furqan Ashraf; Dyaaaldin Abdalmegeed; Xiukang Wang; Muhammad Imran; Hakim Manghwar; Lei Zhou
Journal:  Front Plant Sci       Date:  2022-03-17       Impact factor: 5.753

  2 in total

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