Literature DB >> 32488865

External validation of radiomics-based predictive models in low-dose CT screening for early lung cancer diagnosis.

Noemi Garau1,2, Chiara Paganelli1, Paul Summers2, Wookjin Choi3, Sadegh Alam4, Wei Lu4, Cristiana Fanciullo5, Massimo Bellomi2,6, Guido Baroni1,7, Cristiano Rampinelli2.   

Abstract

PURPOSE: Low-dose CT screening allows early lung cancer detection, but is affected by frequent false positive results, inter/intra observer variation and uncertain diagnoses of lung nodules. Radiomics-based models have recently been introduced to overcome these issues, but limitations in demonstrating their generalizability on independent datasets are slowing their introduction to clinic. The aim of this study is to evaluate two radiomics-based models to classify malignant pulmonary nodules in low-dose CT screening, and to externally validate them on an independent cohort. The effect of a radiomics features harmonization technique is also investigated to evaluate its impact on the classification of lung nodules from a multicenter data.
METHODS: Pulmonary nodules from two independent cohorts were considered in this study; the first cohort (110 subjects, 113 nodules) was used to train prediction models, and the second cohort (72 nodules) to externally validate them. Literature-based radiomics features were extracted and, after feature selection, used as predictive variables in models for malignancy identification. An in-house prediction model based on artificial neural network (ANN) was implemented and evaluated, along with an alternative model from the literature, based on a support vector machine (SVM) classifier coupled with a least absolute shrinkage and selection operator (LASSO). External validation was performed on the second cohort to evaluate models' generalization ability. Additionally, the impact of the Combat harmonization method was investigated to compensate for multicenter datasets variabilities. A new training of the models based on harmonized features was performed on the first cohort, then tested separately on the harmonized and non-harmonized features of the second cohort.
RESULTS: Preliminary results showed a good accuracy of the investigated models in distinguishing benign from malignant pulmonary nodules with both sets of radiomics features (i.e., non-harmonized and harmonized). The performance of the models, quantified in terms of Area Under the Curve (AUC), was > 0.89 in the training set and > 0.82 in the external validation set for all the investigated scenarios, outperforming the clinical standard (AUC of 0.76). Slightly higher performance was observed for the SVM-LASSO model than the ANN in the external dataset, although they did not result significantly different. For both harmonized and non-harmonized features, no statistical difference was found between Receiver operating characteristic (ROC) curves related to training and test set for both models.
CONCLUSIONS: Although no significant improvements were observed when applying the Combat harmonization method, both in-house and literature-based models were able to classify lung nodules with good generalization to an independent dataset, thus showing their potential as tools for clinical decision-making in lung cancer screening.
© 2020 American Association of Physicists in Medicine.

Entities:  

Keywords:  low-dose CT screening; lung nodules classification; radiomics

Mesh:

Year:  2020        PMID: 32488865      PMCID: PMC7708421          DOI: 10.1002/mp.14308

Source DB:  PubMed          Journal:  Med Phys        ISSN: 0094-2405            Impact factor:   4.071


  33 in total

Review 1.  Computer-aided diagnosis in lung nodule assessment.

Authors:  Jonathan G Goldin; Matthew S Brown; Iva Petkovska
Journal:  J Thorac Imaging       Date:  2008-05       Impact factor: 3.000

2.  Harmonization of multi-site diffusion tensor imaging data.

Authors:  Jean-Philippe Fortin; Drew Parker; Birkan Tunç; Takanori Watanabe; Mark A Elliott; Kosha Ruparel; David R Roalf; Theodore D Satterthwaite; Ruben C Gur; Raquel E Gur; Robert T Schultz; Ragini Verma; Russell T Shinohara
Journal:  Neuroimage       Date:  2017-08-18       Impact factor: 6.556

3.  Unsupervised machine learning of radiomic features for predicting treatment response and overall survival of early stage non-small cell lung cancer patients treated with stereotactic body radiation therapy.

Authors:  Hongming Li; Maya Galperin-Aizenberg; Daniel Pryma; Charles B Simone; Yong Fan
Journal:  Radiother Oncol       Date:  2018-07-04       Impact factor: 6.280

4.  A radiomics approach to assess tumour-infiltrating CD8 cells and response to anti-PD-1 or anti-PD-L1 immunotherapy: an imaging biomarker, retrospective multicohort study.

Authors:  Roger Sun; Elaine Johanna Limkin; Maria Vakalopoulou; Laurent Dercle; Stéphane Champiat; Shan Rong Han; Loïc Verlingue; David Brandao; Andrea Lancia; Samy Ammari; Antoine Hollebecque; Jean-Yves Scoazec; Aurélien Marabelle; Christophe Massard; Jean-Charles Soria; Charlotte Robert; Nikos Paragios; Eric Deutsch; Charles Ferté
Journal:  Lancet Oncol       Date:  2018-08-14       Impact factor: 41.316

5.  The Lung Image Database Consortium (LIDC) and Image Database Resource Initiative (IDRI): a completed reference database of lung nodules on CT scans.

Authors:  Samuel G Armato; Geoffrey McLennan; Luc Bidaut; Michael F McNitt-Gray; Charles R Meyer; Anthony P Reeves; Binsheng Zhao; Denise R Aberle; Claudia I Henschke; Eric A Hoffman; Ella A Kazerooni; Heber MacMahon; Edwin J R Van Beeke; David Yankelevitz; Alberto M Biancardi; Peyton H Bland; Matthew S Brown; Roger M Engelmann; Gary E Laderach; Daniel Max; Richard C Pais; David P Y Qing; Rachael Y Roberts; Amanda R Smith; Adam Starkey; Poonam Batrah; Philip Caligiuri; Ali Farooqi; Gregory W Gladish; C Matilda Jude; Reginald F Munden; Iva Petkovska; Leslie E Quint; Lawrence H Schwartz; Baskaran Sundaram; Lori E Dodd; Charles Fenimore; David Gur; Nicholas Petrick; John Freymann; Justin Kirby; Brian Hughes; Alessi Vande Casteele; Sangeeta Gupte; Maha Sallamm; Michael D Heath; Michael H Kuhn; Ekta Dharaiya; Richard Burns; David S Fryd; Marcos Salganicoff; Vikram Anand; Uri Shreter; Stephen Vastagh; Barbara Y Croft
Journal:  Med Phys       Date:  2011-02       Impact factor: 4.071

6.  Radiological Image Traits Predictive of Cancer Status in Pulmonary Nodules.

Authors:  Ying Liu; Yoganand Balagurunathan; Thomas Atwater; Sanja Antic; Qian Li; Ronald C Walker; Gary T Smith; Pierre P Massion; Matthew B Schabath; Robert J Gillies
Journal:  Clin Cancer Res       Date:  2016-09-23       Impact factor: 12.531

7.  Radiomics analysis of pulmonary nodules in low-dose CT for early detection of lung cancer.

Authors:  Wookjin Choi; Jung Hun Oh; Sadegh Riyahi; Chia-Ju Liu; Feng Jiang; Wengen Chen; Charles White; Andreas Rimner; James G Mechalakos; Joseph O Deasy; Wei Lu
Journal:  Med Phys       Date:  2018-03-12       Impact factor: 4.071

8.  Transparent Reporting of a multivariable prediction model for Individual Prognosis or Diagnosis (TRIPOD): explanation and elaboration.

Authors:  Karel G M Moons; Douglas G Altman; Johannes B Reitsma; John P A Ioannidis; Petra Macaskill; Ewout W Steyerberg; Andrew J Vickers; David F Ransohoff; Gary S Collins
Journal:  Ann Intern Med       Date:  2015-01-06       Impact factor: 25.391

9.  Harmonizing the pixel size in retrospective computed tomography radiomics studies.

Authors:  Dennis Mackin; Xenia Fave; Lifei Zhang; Jinzhong Yang; A Kyle Jones; Chaan S Ng; Laurence Court
Journal:  PLoS One       Date:  2017-09-21       Impact factor: 3.240

10.  Assessing robustness of radiomic features by image perturbation.

Authors:  Alex Zwanenburg; Stefan Leger; Linda Agolli; Karoline Pilz; Esther G C Troost; Christian Richter; Steffen Löck
Journal:  Sci Rep       Date:  2019-01-24       Impact factor: 4.379

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  5 in total

1.  Reproducibility of radiomic features of pulmonary nodules between low-dose CT and conventional-dose CT.

Authors:  Yufan Gao; Minghui Hua; Jun Lv; Yanhe Ma; Yanzhen Liu; Min Ren; Yaohua Tian; Ximing Li; Hong Zhang
Journal:  Quant Imaging Med Surg       Date:  2022-04

2.  Radiomics and Dosiomics for Predicting Local Control after Carbon-Ion Radiotherapy in Skull-Base Chordoma.

Authors:  Giulia Buizza; Chiara Paganelli; Emma D'Ippolito; Giulia Fontana; Silvia Molinelli; Lorenzo Preda; Giulia Riva; Alberto Iannalfi; Francesca Valvo; Ester Orlandi; Guido Baroni
Journal:  Cancers (Basel)       Date:  2021-01-18       Impact factor: 6.639

Review 3.  Molecular biomarkers in early stage lung cancer.

Authors:  María Rodríguez; Daniel Ajona; Luis M Seijo; Julián Sanz; Karmele Valencia; Jesús Corral; Miguel Mesa-Guzmán; Rubén Pío; Alfonso Calvo; María D Lozano; Javier J Zulueta; Luis M Montuenga
Journal:  Transl Lung Cancer Res       Date:  2021-02

4.  Radiomic Phenotypes for Improving Early Prediction of Survival in Stage III Non-Small Cell Lung Cancer Adenocarcinoma after Chemoradiation.

Authors:  José Marcio Luna; Andrew R Barsky; Russell T Shinohara; Leonid Roshkovan; Michelle Hershman; Alexandra D Dreyfuss; Hannah Horng; Carolyn Lou; Peter B Noël; Keith A Cengel; Sharyn Katz; Eric S Diffenderfer; Despina Kontos
Journal:  Cancers (Basel)       Date:  2022-01-29       Impact factor: 6.639

5.  Integrating Biological and Radiological Data in a Structured Repository: a Data Model Applied to the COSMOS Case Study.

Authors:  Noemi Garau; Alessandro Orro; Paul Summers; Lorenza De Maria; Raffaella Bertolotti; Danny Bassis; Marta Minotti; Elvio De Fiori; Guido Baroni; Chiara Paganelli; Cristiano Rampinelli
Journal:  J Digit Imaging       Date:  2022-03-16       Impact factor: 4.903

  5 in total

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