Literature DB >> 30471698

Visualization and Quantitation of Phase-Separated Droplet Formation by Human HP1α.

Madeline M Keenen1, Adam G Larson1, Geeta J Narlikar2.   

Abstract

The ability of the heterochromatin protein-1 (HP1) to phase separate into droplets suggests new mechanisms of gene organization in the cell nucleus. An accumulating body of work suggests that other nuclear proteins also display phase separation behaviors in vitro. To understand the mechanistic and biological significance of such droplet formation a rigorous biophysical characterization of this behavior is necessary. Herein we describe procedures for imaging HP1 droplets by brightfield microscopy, and two methods to quantify phase separation.
© 2018 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Chromatin; HP1; Phase separation

Mesh:

Substances:

Year:  2018        PMID: 30471698      PMCID: PMC8989641          DOI: 10.1016/bs.mie.2018.09.034

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


  9 in total

1.  Phase separation drives heterochromatin domain formation.

Authors:  Amy R Strom; Alexander V Emelyanov; Mustafa Mir; Dmitry V Fyodorov; Xavier Darzacq; Gary H Karpen
Journal:  Nature       Date:  2017-06-21       Impact factor: 49.962

Review 2.  Liquid-liquid phase separation in biology.

Authors:  Anthony A Hyman; Christoph A Weber; Frank Jülicher
Journal:  Annu Rev Cell Dev Biol       Date:  2014       Impact factor: 13.827

3.  Turbidimetric studies of the in vitro assembly and disassembly of porcine neurotubules.

Authors:  F Gaskin; C R Cantor; M L Shelanski
Journal:  J Mol Biol       Date:  1974-11-15       Impact factor: 5.469

4.  Measurement of in vitro microtubule polymerization by turbidity and fluorescence.

Authors:  Matthew Mirigian; Kamalika Mukherjee; Susan L Bane; Dan L Sackett
Journal:  Methods Cell Biol       Date:  2013       Impact factor: 1.441

5.  Phase transitions in the assembly of multivalent signalling proteins.

Authors:  Pilong Li; Sudeep Banjade; Hui-Chun Cheng; Soyeon Kim; Baoyu Chen; Liang Guo; Marc Llaguno; Javoris V Hollingsworth; David S King; Salman F Banani; Paul S Russo; Qiu-Xing Jiang; B Tracy Nixon; Michael K Rosen
Journal:  Nature       Date:  2012-03-07       Impact factor: 49.962

Review 6.  The Role of Phase Separation in Heterochromatin Formation, Function, and Regulation.

Authors:  Adam G Larson; Geeta J Narlikar
Journal:  Biochemistry       Date:  2018-04-23       Impact factor: 3.321

7.  Liquid droplet formation by HP1α suggests a role for phase separation in heterochromatin.

Authors:  Adam G Larson; Daniel Elnatan; Madeline M Keenen; Michael J Trnka; Jonathan B Johnston; Alma L Burlingame; David A Agard; Sy Redding; Geeta J Narlikar
Journal:  Nature       Date:  2017-06-21       Impact factor: 49.962

Review 8.  Biomolecular condensates: organizers of cellular biochemistry.

Authors:  Salman F Banani; Hyun O Lee; Anthony A Hyman; Michael K Rosen
Journal:  Nat Rev Mol Cell Biol       Date:  2017-02-22       Impact factor: 94.444

9.  Formation and Maturation of Phase-Separated Liquid Droplets by RNA-Binding Proteins.

Authors:  Yuan Lin; David S W Protter; Michael K Rosen; Roy Parker
Journal:  Mol Cell       Date:  2015-09-24       Impact factor: 17.970

  9 in total
  4 in total

1.  Histone H3 and H4 tails play an important role in nucleosome phase separation.

Authors:  Erin F Hammonds; Megan Cleland Harwig; Emeleeta A Paintsil; Emma A Tillison; R Blake Hill; Emma A Morrison
Journal:  Biophys Chem       Date:  2022-02-02       Impact factor: 2.352

2.  Satellite repeat transcripts modulate heterochromatin condensates and safeguard chromosome stability in mouse embryonic stem cells.

Authors:  Clara Lopes Novo; Emily V Wong; Colin Hockings; Chetan Poudel; Eleanor Sheekey; Meike Wiese; Hanneke Okkenhaug; Simon J Boulton; Srinjan Basu; Simon Walker; Gabriele S Kaminski Schierle; Geeta J Narlikar; Peter J Rugg-Gunn
Journal:  Nat Commun       Date:  2022-06-20       Impact factor: 17.694

3.  Cell-free reconstitution of multi-condensate assemblies.

Authors:  Andrea Putnam; Geraldine Seydoux
Journal:  Methods Enzymol       Date:  2020-10-20       Impact factor: 1.600

4.  Phosphoregulation of Phase Separation by the SARS-CoV-2 N Protein Suggests a Biophysical Basis for its Dual Functions.

Authors:  Christopher R Carlson; Jonathan B Asfaha; Chloe M Ghent; Conor J Howard; Nairi Hartooni; Maliheh Safari; Alan D Frankel; David O Morgan
Journal:  Mol Cell       Date:  2020-11-20       Impact factor: 17.970

  4 in total

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