Literature DB >> 29644850

The Role of Phase Separation in Heterochromatin Formation, Function, and Regulation.

Adam G Larson, Geeta J Narlikar.   

Abstract

In eukaryotic cells, structures called heterochromatin play critical roles in nuclear processes ranging from gene repression to chromosome segregation. Biochemical and in vivo studies over the past several decades have implied that the diverse functions of heterochromatin rely on the ability of these structures to spread across large regions of the genome, to compact the underlying DNA, and to recruit different types of activities. Recent observations have suggested that heterochromatin may possess liquid droplet-like properties. Here, we discuss how these observations provide a new perspective on the mechanisms for the assembly, regulation, and functions of heterochromatin.

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Year:  2018        PMID: 29644850      PMCID: PMC9084486          DOI: 10.1021/acs.biochem.8b00401

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.321


  51 in total

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3.  Phase separation drives heterochromatin domain formation.

Authors:  Amy R Strom; Alexander V Emelyanov; Mustafa Mir; Dmitry V Fyodorov; Xavier Darzacq; Gary H Karpen
Journal:  Nature       Date:  2017-06-21       Impact factor: 49.962

4.  De novo formation of a subnuclear body.

Authors:  Trish E Kaiser; Robert V Intine; Miroslav Dundr
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Review 5.  Protamines: structural complexity, evolution and chromatin patterning.

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Journal:  Protein Pept Lett       Date:  2011-08       Impact factor: 1.890

6.  Emil Heitz and the concept of heterochromatin: longitudinal chromosome differentiation was recognized fifty years ago.

Authors:  E Passarge
Journal:  Am J Hum Genet       Date:  1979-03       Impact factor: 11.025

7.  Genomic and Proteomic Resolution of Heterochromatin and Its Restriction of Alternate Fate Genes.

Authors:  Justin S Becker; Ryan L McCarthy; Simone Sidoli; Greg Donahue; Kelsey E Kaeding; Zhiying He; Shu Lin; Benjamin A Garcia; Kenneth S Zaret
Journal:  Mol Cell       Date:  2017-12-21       Impact factor: 17.970

8.  Liquid droplet formation by HP1α suggests a role for phase separation in heterochromatin.

Authors:  Adam G Larson; Daniel Elnatan; Madeline M Keenen; Michael J Trnka; Jonathan B Johnston; Alma L Burlingame; David A Agard; Sy Redding; Geeta J Narlikar
Journal:  Nature       Date:  2017-06-21       Impact factor: 49.962

Review 9.  Biomolecular condensates: organizers of cellular biochemistry.

Authors:  Salman F Banani; Hyun O Lee; Anthony A Hyman; Michael K Rosen
Journal:  Nat Rev Mol Cell Biol       Date:  2017-02-22       Impact factor: 94.444

10.  Formation and Maturation of Phase-Separated Liquid Droplets by RNA-Binding Proteins.

Authors:  Yuan Lin; David S W Protter; Michael K Rosen; Roy Parker
Journal:  Mol Cell       Date:  2015-09-24       Impact factor: 17.970

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  46 in total

1.  Nuclear condensates of the Polycomb protein chromobox 2 (CBX2) assemble through phase separation.

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Review 2.  Viewing Nuclear Architecture through the Eyes of Nocturnal Mammals.

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Review 3.  Role of H3K9me3 heterochromatin in cell identity establishment and maintenance.

Authors:  Dario Nicetto; Kenneth S Zaret
Journal:  Curr Opin Genet Dev       Date:  2019-05-16       Impact factor: 5.578

Review 4.  Physical Chemistry of Cellular Liquid-Phase Separation.

Authors:  Emily P Bentley; Benjamin B Frey; Ashok A Deniz
Journal:  Chemistry       Date:  2019-02-07       Impact factor: 5.236

Review 5.  Chromatin replication and epigenetic cell memory.

Authors:  Kathleen R Stewart-Morgan; Nataliya Petryk; Anja Groth
Journal:  Nat Cell Biol       Date:  2020-03-30       Impact factor: 28.824

Review 6.  Biomolecular Condensates in the Nucleus.

Authors:  Benjamin R Sabari; Alessandra Dall'Agnese; Richard A Young
Journal:  Trends Biochem Sci       Date:  2020-07-17       Impact factor: 13.807

7.  Heterochromatin Protein HP1α Gelation Dynamics Revealed by Solid-State NMR Spectroscopy.

Authors:  Bryce E Ackermann; Galia T Debelouchina
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8.  Mesoscale Liquid Model of Chromatin Recapitulates Nuclear Order of Eukaryotes.

Authors:  Rabia Laghmach; Michele Di Pierro; Davit A Potoyan
Journal:  Biophys J       Date:  2019-09-17       Impact factor: 4.033

9.  Computing 3D Chromatin Configurations from Contact Probability Maps by Inverse Brownian Dynamics.

Authors:  Kiran Kumari; Burkhard Duenweg; Ranjith Padinhateeri; J Ravi Prakash
Journal:  Biophys J       Date:  2020-02-29       Impact factor: 4.033

10.  RNA nucleation by MSL2 induces selective X chromosome compartmentalization.

Authors:  Claudia Isabelle Keller Valsecchi; M Felicia Basilicata; Plamen Georgiev; Aline Gaub; Janine Seyfferth; Tanvi Kulkarni; Amol Panhale; Giuseppe Semplicio; Vinitha Manjunath; Herbert Holz; Pouria Dasmeh; Asifa Akhtar
Journal:  Nature       Date:  2020-11-18       Impact factor: 49.962

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