Literature DB >> 33453934

Cell-free reconstitution of multi-condensate assemblies.

Andrea Putnam1, Geraldine Seydoux2.   

Abstract

Biomolecular condensates (BCs) are intracellular condensates that form by phase separation of proteins and RNA from the nucleoplasm or cytoplasm. BCs often form complex assemblies where compositionally distinct condensates wet each other without mixing. In this chapter, we describe methods to reconstitute multi-condensate assemblies from purified components. We include protocols to express, purify, label, and analyze the dynamics of proteins and RNAs that drive multi-condensate assembly. Analysis of the condensation and wetting behaviors of condensates in cell-free reconstituted systems can be used to define the molecular interactions that regulate BCs in cells.
© 2021 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  FRAP; Fluorescence labeling; Image analysis; Inclusion bodies; MBP; Maltose binding protein; Phase separation; Protein purification; RNA condensate

Mesh:

Substances:

Year:  2020        PMID: 33453934      PMCID: PMC8533030          DOI: 10.1016/bs.mie.2020.07.004

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


  45 in total

Review 1.  FRAP analysis of binding: proper and fitting.

Authors:  Brian L Sprague; James G McNally
Journal:  Trends Cell Biol       Date:  2005-02       Impact factor: 20.808

Review 2.  The multifunctional nucleolus.

Authors:  François-Michel Boisvert; Silvana van Koningsbruggen; Joaquín Navascués; Angus I Lamond
Journal:  Nat Rev Mol Cell Biol       Date:  2007-07       Impact factor: 94.444

3.  Kinase-controlled phase transition of membraneless organelles in mitosis.

Authors:  Arpan Kumar Rai; Jia-Xuan Chen; Matthias Selbach; Lucas Pelkmans
Journal:  Nature       Date:  2018-07-04       Impact factor: 49.962

4.  Amyloid-like Self-Assembly of a Cellular Compartment.

Authors:  Elvan Boke; Martine Ruer; Martin Wühr; Margaret Coughlin; Regis Lemaitre; Steven P Gygi; Simon Alberti; David Drechsel; Anthony A Hyman; Timothy J Mitchison
Journal:  Cell       Date:  2016-07-28       Impact factor: 41.582

5.  Stress-Triggered Phase Separation Is an Adaptive, Evolutionarily Tuned Response.

Authors:  Joshua A Riback; Christopher D Katanski; Jamie L Kear-Scott; Evgeny V Pilipenko; Alexandra E Rojek; Tobin R Sosnick; D Allan Drummond
Journal:  Cell       Date:  2017-03-09       Impact factor: 41.582

6.  Expression and purification of soluble His(6)-tagged TEV protease.

Authors:  Joseph E Tropea; Scott Cherry; David S Waugh
Journal:  Methods Mol Biol       Date:  2009

7.  Labeling of a protein with fluorophores using maleimide derivitization.

Authors:  Jagpreet S Nanda; Jon R Lorsch
Journal:  Methods Enzymol       Date:  2014       Impact factor: 1.600

8.  Visualization and Quantitation of Phase-Separated Droplet Formation by Human HP1α.

Authors:  Madeline M Keenen; Adam G Larson; Geeta J Narlikar
Journal:  Methods Enzymol       Date:  2018-10-31       Impact factor: 1.600

9.  Compositional Control of Phase-Separated Cellular Bodies.

Authors:  Salman F Banani; Allyson M Rice; William B Peeples; Yuan Lin; Saumya Jain; Roy Parker; Michael K Rosen
Journal:  Cell       Date:  2016-06-30       Impact factor: 41.582

10.  Recruitment of mRNAs to P granules by condensation with intrinsically-disordered proteins.

Authors:  Chih-Yung S Lee; Andrea Putnam; Tu Lu; ShuaiXin He; John Paul T Ouyang; Geraldine Seydoux
Journal:  Elife       Date:  2020-01-24       Impact factor: 8.140

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  1 in total

Review 1.  The Dynamic Regulation of mRNA Translation and Ribosome Biogenesis During Germ Cell Development and Reproductive Aging.

Authors:  Marianne Mercer; Seoyeon Jang; Chunyang Ni; Michael Buszczak
Journal:  Front Cell Dev Biol       Date:  2021-11-03
  1 in total

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