Literature DB >> 30420736

A changing paradigm of transcriptional memory propagation through mitosis.

Katherine C Palozola1, Jonathan Lerner1, Kenneth S Zaret2.   

Abstract

The highly reproducible inheritance of chromosomes during mitosis in mammalian cells involves nuclear envelope breakdown, increased chromatin compaction, loss of long-range intrachromosomal interactions, loss of enhancer-promoter proximity, displacement of many transcription regulators from the chromatin and a marked decrease in RNA synthesis. Despite these dramatic changes in the mother cell, daughter cells are able to faithfully re-establish the parental chromatin and gene expression features characteristic of the cell type. Pioneering studies of mitotic chromatin signatures showed that despite global repression of transcription, the Hsp70 gene promoter retains an open chromatin conformation, which was proposed to allow the reactivation of the Hsp70 gene upon completion of mitosis - a phenomenon termed mitotic bookmarking. It was later shown that various cell-type-specific transcription factors, such as GATA-binding factor 1 (GATA1) in erythroblasts and forkhead box protein A1 (FOXA1) in hepatocytes, remain bound at a subset of their interphase binding sites in mitosis. Such bookmarking transcription factors remain on chromosomes in mitosis and have been shown to enable a subset of genes to be reactivated in a timely fashion upon mitotic exit. In addition, sensitive new methods to measure transcription revealed that mitotic cells retain residual transcription at a large number of genes. Furthermore, genes recover their interphase level of transcription in distinct waves. Thus, gene expression is precisely regulated as cells pass through mitosis to ensure faithful propagation of cell identity and function through cellular generations.

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Year:  2019        PMID: 30420736      PMCID: PMC6557398          DOI: 10.1038/s41580-018-0077-z

Source DB:  PubMed          Journal:  Nat Rev Mol Cell Biol        ISSN: 1471-0072            Impact factor:   94.444


  82 in total

1.  A common mechanism for mitotic inactivation of C2H2 zinc finger DNA-binding domains.

Authors:  Sinisa Dovat; Tapani Ronni; Dana Russell; Roger Ferrini; Bradley S Cobb; Stephen T Smale
Journal:  Genes Dev       Date:  2002-12-01       Impact factor: 11.361

2.  Organization of the mitotic chromosome.

Authors:  Natalia Naumova; Maxim Imakaev; Geoffrey Fudenberg; Ye Zhan; Bryan R Lajoie; Leonid A Mirny; Job Dekker
Journal:  Science       Date:  2013-11-07       Impact factor: 47.728

3.  Marking of active genes on mitotic chromosomes.

Authors:  E F Michelotti; S Sanford; D Levens
Journal:  Nature       Date:  1997-08-28       Impact factor: 49.962

Review 4.  Mitotic bookmarking of genes: a novel dimension to epigenetic control.

Authors:  Sayyed K Zaidi; Daniel W Young; Martin A Montecino; Jane B Lian; Andre J van Wijnen; Janet L Stein; Gary S Stein
Journal:  Nat Rev Genet       Date:  2010-07-13       Impact factor: 53.242

5.  Genome reactivation after the silence in mitosis: recapitulating mechanisms of development?

Authors:  Kenneth S Zaret
Journal:  Dev Cell       Date:  2014-04-28       Impact factor: 12.270

Review 6.  Mitotic bookmarking in development and stem cells.

Authors:  Nicola Festuccia; Inma Gonzalez; Nick Owens; Pablo Navarro
Journal:  Development       Date:  2017-10-15       Impact factor: 6.868

7.  Displacement of sequence-specific transcription factors from mitotic chromatin.

Authors:  M A Martínez-Balbás; A Dey; S K Rabindran; K Ozato; C Wu
Journal:  Cell       Date:  1995-10-06       Impact factor: 41.582

Review 8.  Mediators of reprogramming: transcription factors and transitions through mitosis.

Authors:  Dieter Egli; Garrett Birkhoff; Kevin Eggan
Journal:  Nat Rev Mol Cell Biol       Date:  2008-07       Impact factor: 94.444

9.  Regulation of RNA polymerase II termination by phosphorylation of Gdown1.

Authors:  Jiannan Guo; Michael E Turek; David H Price
Journal:  J Biol Chem       Date:  2014-03-14       Impact factor: 5.157

10.  A hyperactive transcriptional state marks genome reactivation at the mitosis-G1 transition.

Authors:  Chris C-S Hsiung; Caroline R Bartman; Peng Huang; Paul Ginart; Aaron J Stonestrom; Cheryl A Keller; Carolyne Face; Kristen S Jahn; Perry Evans; Laavanya Sankaranarayanan; Belinda Giardine; Ross C Hardison; Arjun Raj; Gerd A Blobel
Journal:  Genes Dev       Date:  2016-06-15       Impact factor: 11.361

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  33 in total

Review 1.  Chromatin replication and epigenetic cell memory.

Authors:  Kathleen R Stewart-Morgan; Nataliya Petryk; Anja Groth
Journal:  Nat Cell Biol       Date:  2020-03-30       Impact factor: 28.824

Review 2.  COMPASS and SWI/SNF complexes in development and disease.

Authors:  Bercin K Cenik; Ali Shilatifard
Journal:  Nat Rev Genet       Date:  2020-09-21       Impact factor: 53.242

3.  Non-equilibrium structural dynamics of supercoiled DNA plasmids exhibits asymmetrical relaxation.

Authors:  Cynthia Shaheen; Cameron Hastie; Kimberly Metera; Shane Scott; Zhi Zhang; Sitong Chen; Gracia Gu; Lisa Weber; Brian Munsky; Fedor Kouzine; David Levens; Craig Benham; Sabrina Leslie
Journal:  Nucleic Acids Res       Date:  2022-03-21       Impact factor: 16.971

Review 4.  Emergent properties of mitotic chromosomes.

Authors:  Coral Y Zhou; Rebecca Heald
Journal:  Curr Opin Cell Biol       Date:  2020-03-06       Impact factor: 8.382

Review 5.  The epigenetically-encoded memory of the innate immune system.

Authors:  Sarah Sun; Luis B Barreiro
Journal:  Curr Opin Immunol       Date:  2020-03-25       Impact factor: 7.486

Review 6.  A framework for understanding the functions of biomolecular condensates across scales.

Authors:  Andrew S Lyon; William B Peeples; Michael K Rosen
Journal:  Nat Rev Mol Cell Biol       Date:  2020-11-09       Impact factor: 94.444

7.  Structures and implications of TBP-nucleosome complexes.

Authors:  Haibo Wang; Le Xiong; Patrick Cramer
Journal:  Proc Natl Acad Sci U S A       Date:  2021-07-27       Impact factor: 11.205

Review 8.  Ubiquitin-dependent regulation of transcription in development and disease.

Authors:  Kevin G Mark; Michael Rape
Journal:  EMBO Rep       Date:  2021-03-28       Impact factor: 8.807

9.  H3K27ac bookmarking promotes rapid post-mitotic activation of the pluripotent stem cell program without impacting 3D chromatin reorganization.

Authors:  Bobbie Pelham-Webb; Alexander Polyzos; Luke Wojenski; Andreas Kloetgen; Jiexi Li; Dafne Campigli Di Giammartino; Theodore Sakellaropoulos; Aristotelis Tsirigos; Leighton Core; Effie Apostolou
Journal:  Mol Cell       Date:  2021-03-16       Impact factor: 17.970

Review 10.  Parental nucleosome segregation and the inheritance of cellular identity.

Authors:  Thelma M Escobar; Alejandra Loyola; Danny Reinberg
Journal:  Nat Rev Genet       Date:  2021-01-26       Impact factor: 53.242

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