Literature DB >> 32958894

COMPASS and SWI/SNF complexes in development and disease.

Bercin K Cenik1,2, Ali Shilatifard3,4.   

Abstract

The Trithorax group (TrxG) of proteins is a large family of epigenetic regulators that form multiprotein complexes to counteract repressive developmental gene expression programmes established by the Polycomb group of proteins and to promote and maintain an active state of gene expression. Recent studies are providing new insights into how two crucial families of the TrxG - the COMPASS family of histone H3 lysine 4 methyltransferases and the SWI/SNF family of chromatin remodelling complexes - regulate gene expression and developmental programmes, and how misregulation of their activities through genetic abnormalities leads to pathologies such as developmental disorders and malignancies.

Entities:  

Year:  2020        PMID: 32958894     DOI: 10.1038/s41576-020-0278-0

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  263 in total

1.  Genetic control of the spatial pattern of selector gene expression in Drosophila.

Authors:  P W Ingham
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1985

2.  COMPASS, a histone H3 (Lysine 4) methyltransferase required for telomeric silencing of gene expression.

Authors:  Nevan J Krogan; Jim Dover; Shahram Khorrami; Jack F Greenblatt; Jessica Schneider; Mark Johnston; Ali Shilatifard
Journal:  J Biol Chem       Date:  2002-01-22       Impact factor: 5.157

3.  COMPASS: a complex of proteins associated with a trithorax-related SET domain protein.

Authors:  T Miller; N J Krogan; J Dover; H Erdjument-Bromage; P Tempst; M Johnston; J F Greenblatt; A Shilatifard
Journal:  Proc Natl Acad Sci U S A       Date:  2001-10-30       Impact factor: 11.205

Review 4.  Genome Regulation by Polycomb and Trithorax: 70 Years and Counting.

Authors:  Bernd Schuettengruber; Henri-Marc Bourbon; Luciano Di Croce; Giacomo Cavalli
Journal:  Cell       Date:  2017-09-21       Impact factor: 41.582

5.  The Saccharomyces cerevisiae Set1 complex includes an Ash2 homologue and methylates histone 3 lysine 4.

Authors:  A Roguev; D Schaft; A Shevchenko; W W Pijnappel; M Wilm; R Aasland; A F Stewart
Journal:  EMBO J       Date:  2001-12-17       Impact factor: 11.598

6.  Molecular regulation of histone H3 trimethylation by COMPASS and the regulation of gene expression.

Authors:  Jessica Schneider; Adam Wood; Jung-Shin Lee; Rebecca Schuster; Jeff Dueker; Courtney Maguire; Selene K Swanson; Laurence Florens; Michael P Washburn; Ali Shilatifard
Journal:  Mol Cell       Date:  2005-09-16       Impact factor: 17.970

7.  Ctk complex-mediated regulation of histone methylation by COMPASS.

Authors:  Adam Wood; Abhijit Shukla; Jessica Schneider; Jung Shin Lee; Julie D Stanton; Tiffany Dzuiba; Selene K Swanson; Laurence Florens; Michael P Washburn; John Wyrick; Sukesh R Bhaumik; Ali Shilatifard
Journal:  Mol Cell Biol       Date:  2006-11-06       Impact factor: 4.272

8.  Genetic interaction between homoeotic Sex combs reduced and Regulator of bithorax (or trithorax) genes of Drosophila melanogaster.

Authors:  Takashi Sato
Journal:  Rouxs Arch Dev Biol       Date:  1988-12

9.  Differential expression of bithorax complex genes in the absence of the extra sex combs and trithorax genes.

Authors:  P W Ingham
Journal:  Nature       Date:  1983 Dec 8-14       Impact factor: 49.962

Review 10.  Mammalian SWI/SNF chromatin remodeling complexes and cancer: Mechanistic insights gained from human genomics.

Authors:  Cigall Kadoch; Gerald R Crabtree
Journal:  Sci Adv       Date:  2015-06-12       Impact factor: 14.136

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  31 in total

Review 1.  Characterizing cis-regulatory elements using single-cell epigenomics.

Authors:  Sebastian Preissl; Kyle J Gaulton; Bing Ren
Journal:  Nat Rev Genet       Date:  2022-07-15       Impact factor: 59.581

Review 2.  Soma-to-germline transformation in chromatin-linked neurodevelopmental disorders?

Authors:  Katherine M Bonefas; Shigeki Iwase
Journal:  FEBS J       Date:  2021-10-08       Impact factor: 5.622

3.  A synthetic lethality screen reveals ING5 as a genetic dependency of catalytically dead Set1A/COMPASS in mouse embryonic stem cells.

Authors:  Bercin K Cenik; Christie C Sze; Caila A Ryan; Siddhartha Das; Kaixiang Cao; Delphine Douillet; Emily J Rendleman; Didi Zha; Nabiha Haleema Khan; Elizabeth Bartom; Ali Shilatifard
Journal:  Proc Natl Acad Sci U S A       Date:  2022-05-02       Impact factor: 12.779

Review 4.  Regulation, functions and transmission of bivalent chromatin during mammalian development.

Authors:  Trisha A Macrae; Julie Fothergill-Robinson; Miguel Ramalho-Santos
Journal:  Nat Rev Mol Cell Biol       Date:  2022-08-26       Impact factor: 113.915

5.  Putative Roles of SETBP1 Dosage on the SET Oncogene to Affect Brain Development.

Authors:  Lilit Antonyan; Carl Ernst
Journal:  Front Neurosci       Date:  2022-05-24       Impact factor: 5.152

6.  The MLL3/4 complexes and MiDAC co-regulate H4K20ac to control a specific gene expression program.

Authors:  Xiaokang Wang; Wojciech Rosikiewicz; Yurii Sedkov; Baisakhi Mondal; Tanner Martinez; Satish Kallappagoudar; Andrey Tvardovskiy; Richa Bajpai; Beisi Xu; Shondra M Pruett-Miller; Robert Schneider; Hans-Martin Herz
Journal:  Life Sci Alliance       Date:  2022-07-12

7.  GATA6 defines endoderm fate by controlling chromatin accessibility during differentiation of human-induced pluripotent stem cells.

Authors:  James A Heslop; Behshad Pournasr; Jui-Tung Liu; Stephen A Duncan
Journal:  Cell Rep       Date:  2021-05-18       Impact factor: 9.423

Review 8.  Interplay between chromatin marks in development and disease.

Authors:  Sanne M Janssen; Matthew C Lorincz
Journal:  Nat Rev Genet       Date:  2021-10-04       Impact factor: 53.242

Review 9.  The roles of Polycomb repressive complexes in mammalian development and cancer.

Authors:  Andrea Piunti; Ali Shilatifard
Journal:  Nat Rev Mol Cell Biol       Date:  2021-03-15       Impact factor: 94.444

Review 10.  The MLL3/4 H3K4 methyltransferase complex in establishing an active enhancer landscape.

Authors:  Lan-Hsin Wang; Marvin Angelo E Aberin; Sean Wu; Shu-Ping Wang
Journal:  Biochem Soc Trans       Date:  2021-06-30       Impact factor: 5.407

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