Literature DB >> 32231312

Chromatin replication and epigenetic cell memory.

Kathleen R Stewart-Morgan1,2, Nataliya Petryk2,3, Anja Groth4,5.   

Abstract

Propagation of the chromatin landscape across cell divisions is central to epigenetic cell memory. Mechanistic analysis of the interplay between DNA replication, the cell cycle, and the epigenome has provided insights into replication-coupled chromatin assembly and post-replicative chromatin maintenance. These breakthroughs are critical for defining how proliferation impacts the epigenome during cell identity changes in development and disease. Here we review these findings in the broader context of epigenetic inheritance across mitotic cell division.

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Year:  2020        PMID: 32231312     DOI: 10.1038/s41556-020-0487-y

Source DB:  PubMed          Journal:  Nat Cell Biol        ISSN: 1465-7392            Impact factor:   28.824


  136 in total

1.  High-resolution mapping and characterization of open chromatin across the genome.

Authors:  Alan P Boyle; Sean Davis; Hennady P Shulha; Paul Meltzer; Elliott H Margulies; Zhiping Weng; Terrence S Furey; Gregory E Crawford
Journal:  Cell       Date:  2008-01-25       Impact factor: 41.582

Review 2.  Regulating DNA replication in eukarya.

Authors:  Khalid Siddiqui; Kin Fan On; John F X Diffley
Journal:  Cold Spring Harb Perspect Biol       Date:  2013-09-01       Impact factor: 10.005

Review 3.  Regulation of chromatin by histone modifications.

Authors:  Andrew J Bannister; Tony Kouzarides
Journal:  Cell Res       Date:  2011-02-15       Impact factor: 25.617

Review 4.  Epigenome regulation during germ cell specification and development from pluripotent stem cells.

Authors:  Kazuki Kurimoto; Mitinori Saitou
Journal:  Curr Opin Genet Dev       Date:  2018-06-13       Impact factor: 5.578

Review 5.  Control of DNA replication timing in the 3D genome.

Authors:  Claire Marchal; Jiao Sima; David M Gilbert
Journal:  Nat Rev Mol Cell Biol       Date:  2019-09-02       Impact factor: 94.444

Review 6.  Ten principles of heterochromatin formation and function.

Authors:  Robin C Allshire; Hiten D Madhani
Journal:  Nat Rev Mol Cell Biol       Date:  2017-12-13       Impact factor: 94.444

Review 7.  Epigenetic plasticity and the hallmarks of cancer.

Authors:  William A Flavahan; Elizabeth Gaskell; Bradley E Bernstein
Journal:  Science       Date:  2017-07-21       Impact factor: 47.728

8.  Genome-wide maps of chromatin state in pluripotent and lineage-committed cells.

Authors:  Tarjei S Mikkelsen; Manching Ku; David B Jaffe; Biju Issac; Erez Lieberman; Georgia Giannoukos; Pablo Alvarez; William Brockman; Tae-Kyung Kim; Richard P Koche; William Lee; Eric Mendenhall; Aisling O'Donovan; Aviva Presser; Carsten Russ; Xiaohui Xie; Alexander Meissner; Marius Wernig; Rudolf Jaenisch; Chad Nusbaum; Eric S Lander; Bradley E Bernstein
Journal:  Nature       Date:  2007-07-01       Impact factor: 49.962

Review 9.  Transgenerational epigenetic inheritance: myths and mechanisms.

Authors:  Edith Heard; Robert A Martienssen
Journal:  Cell       Date:  2014-03-27       Impact factor: 41.582

Review 10.  Chromatin and nucleosome dynamics in DNA damage and repair.

Authors:  Michael H Hauer; Susan M Gasser
Journal:  Genes Dev       Date:  2017-11-15       Impact factor: 11.361

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  42 in total

Review 1.  Genome-wide and sister chromatid-resolved profiling of protein occupancy in replicated chromatin with ChOR-seq and SCAR-seq.

Authors:  Nataliya Petryk; Nazaret Reverón-Gómez; Cristina González-Aguilera; Maria Dalby; Robin Andersson; Anja Groth
Journal:  Nat Protoc       Date:  2021-08-06       Impact factor: 13.491

2.  Unique and contrasting effects of light and temperature cues on plant transcriptional programs.

Authors:  Mai Jarad; Rea Antoniou-Kourounioti; Jo Hepworth; Julia I Qüesta
Journal:  Transcription       Date:  2020-10-04

Review 3.  Asymmetric inheritance of epigenetic states in asymmetrically dividing stem cells.

Authors:  Emily H Zion; Chinmayi Chandrasekhara; Xin Chen
Journal:  Curr Opin Cell Biol       Date:  2020-08-29       Impact factor: 8.382

4.  Mammalian SWI/SNF continuously restores local accessibility to chromatin.

Authors:  Mario Iurlaro; Michael B Stadler; Francesca Masoni; Zainab Jagani; Giorgio G Galli; Dirk Schübeler
Journal:  Nat Genet       Date:  2021-02-08       Impact factor: 38.330

Review 5.  The heterogeneity of microglial activation and its epigenetic and non-coding RNA regulations in the immunopathogenesis of neurodegenerative diseases.

Authors:  Chaoyi Li; Jie Ren; Mengfei Zhang; Huakun Wang; Fang Yi; Junjiao Wu; Yu Tang
Journal:  Cell Mol Life Sci       Date:  2022-09-06       Impact factor: 9.207

6.  HP1 oligomerization compensates for low-affinity H3K9me recognition and provides a tunable mechanism for heterochromatin-specific localization.

Authors:  Saikat Biswas; Ziyuan Chen; Joshua D Karslake; Ali Farhat; Amanda Ames; Gulzhan Raiymbek; Peter L Freddolino; Julie S Biteen; Kaushik Ragunathan
Journal:  Sci Adv       Date:  2022-07-08       Impact factor: 14.957

Review 7.  Parental nucleosome segregation and the inheritance of cellular identity.

Authors:  Thelma M Escobar; Alejandra Loyola; Danny Reinberg
Journal:  Nat Rev Genet       Date:  2021-01-26       Impact factor: 53.242

8.  Epigenetic Markers Associated with Schistosomiasis.

Authors:  R A Gomes Assenço; E Alves Mota; V F De Oliveira; W De Castro Borges; R Guerra-Sá
Journal:  Helminthologia       Date:  2021-02-10       Impact factor: 1.184

9.  How does epigenetics influence the course of evolution?

Authors:  Alyson Ashe; Vincent Colot; Benjamin P Oldroyd
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2021-04-19       Impact factor: 6.671

Review 10.  The roles of inducible chromatin and transcriptional memory in cellular defense system responses to redox-active pollutants.

Authors:  Caren Weinhouse
Journal:  Free Radic Biol Med       Date:  2021-03-28       Impact factor: 8.101

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