Literature DB >> 32220702

The epigenetically-encoded memory of the innate immune system.

Sarah Sun1, Luis B Barreiro2.   

Abstract

Stimulation or infection of innate immune cells induces profound epigenetic changes, including the induction of histone modifications and alterations in DNA methylation levels. While some of these changes are rapidly reversible, others appear to be long-lasting, even in mitotic populations, with important functional consequences for the stimulus-experienced cell. Here we discuss the individual contributions of each of the plethora of known epigenetic modifications to the initial transcriptional response to immune activation, their dynamics as cells return to homeostasis, and their contribution to memory of the initial stimulus.
Copyright © 2020 Elsevier Ltd. All rights reserved.

Entities:  

Year:  2020        PMID: 32220702      PMCID: PMC7529637          DOI: 10.1016/j.coi.2020.02.002

Source DB:  PubMed          Journal:  Curr Opin Immunol        ISSN: 0952-7915            Impact factor:   7.486


  59 in total

1.  The Human Transcription Factors.

Authors:  Samuel A Lambert; Arttu Jolma; Laura F Campitelli; Pratyush K Das; Yimeng Yin; Mihai Albu; Xiaoting Chen; Jussi Taipale; Timothy R Hughes; Matthew T Weirauch
Journal:  Cell       Date:  2018-10-04       Impact factor: 41.582

2.  Master transcription factors determine cell-type-specific responses to TGF-β signaling.

Authors:  Alan C Mullen; David A Orlando; Jamie J Newman; Jakob Lovén; Roshan M Kumar; Steve Bilodeau; Jessica Reddy; Matthew G Guenther; Rodney P DeKoter; Richard A Young
Journal:  Cell       Date:  2011-10-28       Impact factor: 41.582

3.  DNMT3A mutations in acute myeloid leukemia.

Authors:  Timothy J Ley; Li Ding; Matthew J Walter; Michael D McLellan; Tamara Lamprecht; David E Larson; Cyriac Kandoth; Jacqueline E Payton; Jack Baty; John Welch; Christopher C Harris; Cheryl F Lichti; R Reid Townsend; Robert S Fulton; David J Dooling; Daniel C Koboldt; Heather Schmidt; Qunyuan Zhang; John R Osborne; Ling Lin; Michelle O'Laughlin; Joshua F McMichael; Kim D Delehaunty; Sean D McGrath; Lucinda A Fulton; Vincent J Magrini; Tammi L Vickery; Jasreet Hundal; Lisa L Cook; Joshua J Conyers; Gary W Swift; Jerry P Reed; Patricia A Alldredge; Todd Wylie; Jason Walker; Joelle Kalicki; Mark A Watson; Sharon Heath; William D Shannon; Nobish Varghese; Rakesh Nagarajan; Peter Westervelt; Michael H Tomasson; Daniel C Link; Timothy A Graubert; John F DiPersio; Elaine R Mardis; Richard K Wilson
Journal:  N Engl J Med       Date:  2010-11-10       Impact factor: 91.245

4.  A Single-Cell Atlas of In Vivo Mammalian Chromatin Accessibility.

Authors:  Darren A Cusanovich; Andrew J Hill; Delasa Aghamirzaie; Riza M Daza; Hannah A Pliner; Joel B Berletch; Galina N Filippova; Xingfan Huang; Lena Christiansen; William S DeWitt; Choli Lee; Samuel G Regalado; David F Read; Frank J Steemers; Christine M Disteche; Cole Trapnell; Jay Shendure
Journal:  Cell       Date:  2018-08-02       Impact factor: 41.582

5.  Candida albicans infection affords protection against reinfection via functional reprogramming of monocytes.

Authors:  Jessica Quintin; Sadia Saeed; Joost H A Martens; Evangelos J Giamarellos-Bourboulis; Daniela C Ifrim; Colin Logie; Liesbeth Jacobs; Trees Jansen; Bart-Jan Kullberg; Cisca Wijmenga; Leo A B Joosten; Ramnik J Xavier; Jos W M van der Meer; Hendrik G Stunnenberg; Mihai G Netea
Journal:  Cell Host Microbe       Date:  2012-08-16       Impact factor: 21.023

6.  Selective, stable demethylation of the interleukin-2 gene enhances transcription by an active process.

Authors:  Denis Bruniquel; Ronald H Schwartz
Journal:  Nat Immunol       Date:  2003-01-27       Impact factor: 25.606

7.  Epigenetics. Epigenetic inheritance uncoupled from sequence-specific recruitment.

Authors:  Kaushik Ragunathan; Gloria Jih; Danesh Moazed
Journal:  Science       Date:  2014-11-20       Impact factor: 47.728

8.  Modulation of Myelopoiesis Progenitors Is an Integral Component of Trained Immunity.

Authors:  Ioannis Mitroulis; Klara Ruppova; Baomei Wang; Lan-Sun Chen; Michal Grzybek; Tatyana Grinenko; Anne Eugster; Maria Troullinaki; Alessandra Palladini; Ioannis Kourtzelis; Antonios Chatzigeorgiou; Andreas Schlitzer; Marc Beyer; Leo A B Joosten; Berend Isermann; Mathias Lesche; Andreas Petzold; Kai Simons; Ian Henry; Andreas Dahl; Joachim L Schultze; Ben Wielockx; Nicola Zamboni; Peter Mirtschink; Ünal Coskun; George Hajishengallis; Mihai G Netea; Triantafyllos Chavakis
Journal:  Cell       Date:  2018-01-11       Impact factor: 41.582

9.  Tissue-resident macrophage enhancer landscapes are shaped by the local microenvironment.

Authors:  Yonit Lavin; Deborah Winter; Ronnie Blecher-Gonen; Eyal David; Hadas Keren-Shaul; Miriam Merad; Steffen Jung; Ido Amit
Journal:  Cell       Date:  2014-12-04       Impact factor: 41.582

10.  Integrative analysis of 111 reference human epigenomes.

Authors:  Anshul Kundaje; Wouter Meuleman; Jason Ernst; Misha Bilenky; Angela Yen; Alireza Heravi-Moussavi; Pouya Kheradpour; Zhizhuo Zhang; Jianrong Wang; Michael J Ziller; Viren Amin; John W Whitaker; Matthew D Schultz; Lucas D Ward; Abhishek Sarkar; Gerald Quon; Richard S Sandstrom; Matthew L Eaton; Yi-Chieh Wu; Andreas R Pfenning; Xinchen Wang; Melina Claussnitzer; Yaping Liu; Cristian Coarfa; R Alan Harris; Noam Shoresh; Charles B Epstein; Elizabeta Gjoneska; Danny Leung; Wei Xie; R David Hawkins; Ryan Lister; Chibo Hong; Philippe Gascard; Andrew J Mungall; Richard Moore; Eric Chuah; Angela Tam; Theresa K Canfield; R Scott Hansen; Rajinder Kaul; Peter J Sabo; Mukul S Bansal; Annaick Carles; Jesse R Dixon; Kai-How Farh; Soheil Feizi; Rosa Karlic; Ah-Ram Kim; Ashwinikumar Kulkarni; Daofeng Li; Rebecca Lowdon; GiNell Elliott; Tim R Mercer; Shane J Neph; Vitor Onuchic; Paz Polak; Nisha Rajagopal; Pradipta Ray; Richard C Sallari; Kyle T Siebenthall; Nicholas A Sinnott-Armstrong; Michael Stevens; Robert E Thurman; Jie Wu; Bo Zhang; Xin Zhou; Arthur E Beaudet; Laurie A Boyer; Philip L De Jager; Peggy J Farnham; Susan J Fisher; David Haussler; Steven J M Jones; Wei Li; Marco A Marra; Michael T McManus; Shamil Sunyaev; James A Thomson; Thea D Tlsty; Li-Huei Tsai; Wei Wang; Robert A Waterland; Michael Q Zhang; Lisa H Chadwick; Bradley E Bernstein; Joseph F Costello; Joseph R Ecker; Martin Hirst; Alexander Meissner; Aleksandar Milosavljevic; Bing Ren; John A Stamatoyannopoulos; Ting Wang; Manolis Kellis
Journal:  Nature       Date:  2015-02-19       Impact factor: 69.504

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  4 in total

1.  Maladaptive innate immune training of myelopoiesis links inflammatory comorbidities.

Authors:  Xiaofei Li; Hui Wang; Xiang Yu; Gundappa Saha; Lydia Kalafati; Charalampos Ioannidis; Ioannis Mitroulis; Mihai G Netea; Triantafyllos Chavakis; George Hajishengallis
Journal:  Cell       Date:  2022-04-27       Impact factor: 66.850

Review 2.  The Role of Epigenetic Functionalization of Implants and Biomaterials in Osseointegration and Bone Regeneration-A Review.

Authors:  Farah Asa'ad; Goda Pelanyte; Jincy Philip; Christer Dahlin; Lena Larsson
Journal:  Molecules       Date:  2020-12-12       Impact factor: 4.411

3.  Disease-related blood-based differential methylation in cystic fibrosis and its representation in lung cancer revealed a regulatory locus in PKP3 in lung epithelial cells.

Authors:  Esther Schamschula; Angelika Lahnsteiner; Yassen Assenov; Wolfgang Hagmann; Nadja Zaborsky; Markus Wiederstein; Anna Strobl; Frauke Stanke; Thomas Muley; Christoph Plass; Burkhard Tümmler; Angela Risch
Journal:  Epigenetics       Date:  2021-08-20       Impact factor: 4.861

Review 4.  What will studies of Fulani individuals naturally exposed to malaria teach us about protective immunity to malaria?

Authors:  Marita Troye-Blomberg; Charles Arama; Jaclyn Quin; Ioana Bujila; Ann-Kristin Östlund Farrants
Journal:  Scand J Immunol       Date:  2020-10       Impact factor: 3.889

  4 in total

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