Literature DB >> 30412392

Oxidation of 8-Oxo-7,8-dihydro-2'-deoxyguanosine Leads to Substantial DNA-Histone Cross-Links within Nucleosome Core Particles.

Jing Bai1, Yingqian Zhang1, Zhen Xi1, Marc M Greenberg2, Chuanzheng Zhou1,3.   

Abstract

<span class="Chemical">8-Oxo-7,8-dihydro-2'-deoxyguanosine(<span class="Chemical">8-oxodGuo) is a common primary product of cellular oxidative DNA damage. 8-OxodGuo is more readily oxidized than 2'-deoxyguanosine (dG); a two-electron oxidation generates a highly reactive intermediate (OGox), which forms covalent adducts with nucleophiles, including OH-, free amines, and the side chains of amino acids such as lysine. We determined here that K3Fe(CN)6 oxidation of 8-oxodGuo in nucleosome core particles (NCPs) produces high yields, quantitative (i.e., 100%) in some cases, of DNA-protein cross-links (DPCs). The efficiency of DPC formation was closely related to 8-oxodGuo base pairing and location within the NCP and was only slightly decreased by adding the DNA-protective polyamine spermine to the system. Using NCPs that contained histone mutants, we determined that DPCs result predominantly from OGox trapping by the N-terminal histone amine. The DPCs were stable under physiological conditions and therefore could have important biological consequences. For instance, the essentially quantitative yield of DPCs at some positions within NCPs would reduce the yield of the mutagenic DNA lesions spiroiminodihydantoin and guanidinohydantoin produced from the common intermediate OGox, which in turn would affect mutation signatures of oxidative stress in a position-dependent manner. In summary, our findings indicate that site-specific incorporation of 8-oxodGuo into NCPs, followed by its oxidation, leads to DPCs with an efficiency depending on 8-oxodGuo location and orientation. Given that 8-oxodGuo formation is widespread in genomic DNA and that DPC formation is highly efficient, DPCs may occur in eukaryotic cells and may affect several important biological processes.

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Year:  2018        PMID: 30412392      PMCID: PMC6425731          DOI: 10.1021/acs.chemrestox.8b00244

Source DB:  PubMed          Journal:  Chem Res Toxicol        ISSN: 0893-228X            Impact factor:   3.739


  58 in total

1.  DNA stretching and extreme kinking in the nucleosome core.

Authors:  Michelle S Ong; Timothy J Richmond; Curt A Davey
Journal:  J Mol Biol       Date:  2007-03-02       Impact factor: 5.469

Review 2.  Regulation of nucleosome dynamics by histone modifications.

Authors:  Gabriel E Zentner; Steven Henikoff
Journal:  Nat Struct Mol Biol       Date:  2013-03       Impact factor: 15.369

3.  Site-specific Acetylation of Histone H3 Decreases Polymerase β Activity on Nucleosome Core Particles in Vitro.

Authors:  Yesenia Rodriguez; John M Hinz; Marian F Laughery; John J Wyrick; Michael J Smerdon
Journal:  J Biol Chem       Date:  2016-03-31       Impact factor: 5.157

4.  Computational Study of Oxidation of Guanine by Singlet Oxygen (1 Δg ) and Formation of Guanine:Lysine Cross-Links.

Authors:  Bishnu Thapa; Barbara H Munk; Cynthia J Burrows; H Bernhard Schlegel
Journal:  Chemistry       Date:  2017-04-05       Impact factor: 5.236

5.  The structural location of DNA lesions in nucleosome core particles determines accessibility by base excision repair enzymes.

Authors:  Yesenia Rodriguez; Michael J Smerdon
Journal:  J Biol Chem       Date:  2013-03-29       Impact factor: 5.157

6.  Gel electrophoretic detection of 7,8-dihydro-8-oxoguanine and 7, 8-dihydro-8-oxoadenine via oxidation by Ir (IV).

Authors:  J G Muller; V Duarte; R P Hickerson; C J Burrows
Journal:  Nucleic Acids Res       Date:  1998-05-01       Impact factor: 16.971

7.  Characterization of spiroiminodihydantoin as a product of one-electron oxidation of 8-Oxo-7,8-dihydroguanosine.

Authors:  W Luo; J G Muller; E M Rachlin; C J Burrows
Journal:  Org Lett       Date:  2000-03-09       Impact factor: 6.005

8.  Ferrocyanide - a novel catalyst for oxymyoglobin oxidation by molecular oxygen.

Authors:  G B Postnikova; S A Moiseeva; E A Shekhovtsova; E V Goraev; V S Sivozhelezov
Journal:  FEBS J       Date:  2007-09-24       Impact factor: 5.542

9.  Rates of chemical cleavage of DNA and RNA oligomers containing guanine oxidation products.

Authors:  Aaron M Fleming; Omar Alshykhly; Judy Zhu; James G Muller; Cynthia J Burrows
Journal:  Chem Res Toxicol       Date:  2015-04-22       Impact factor: 3.739

Review 10.  Post-translational modifications of histones that influence nucleosome dynamics.

Authors:  Gregory D Bowman; Michael G Poirier
Journal:  Chem Rev       Date:  2014-11-26       Impact factor: 60.622

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  8 in total

Review 1.  (De)Toxifying the Epigenetic Code.

Authors:  Qingfei Zheng; Nicholas A Prescott; Igor Maksimovic; Yael David
Journal:  Chem Res Toxicol       Date:  2019-03-18       Impact factor: 3.739

2.  Histone variants H3.3 and H2A.Z/H3.3 facilitate excision of uracil from nucleosome core particles.

Authors:  Chuxuan Li; Katelyn L Rioux; Sarah Delaney
Journal:  DNA Repair (Amst)       Date:  2022-06-12

3.  Excision of Oxidatively Generated Guanine Lesions by Competing Base and Nucleotide Excision Repair Mechanisms in Human Cells.

Authors:  Vladimir Shafirovich; Konstantin Kropachev; Marina Kolbanovskiy; Nicholas E Geacintov
Journal:  Chem Res Toxicol       Date:  2019-02-08       Impact factor: 3.739

4.  Participation of Histones in DNA Damage and Repair within Nucleosome Core Particles: Mechanism and Applications.

Authors:  Mengtian Ren; Marc M Greenberg; Chuanzheng Zhou
Journal:  Acc Chem Res       Date:  2022-03-10       Impact factor: 22.384

5.  Histones participate in base excision repair of 8-oxodGuo by transiently cross-linking with active repair intermediates in nucleosome core particles.

Authors:  Mengtian Ren; Mengdi Shang; Huawei Wang; Zhen Xi; Chuanzheng Zhou
Journal:  Nucleic Acids Res       Date:  2021-01-11       Impact factor: 16.971

Review 6.  A Photosensitized Singlet Oxygen (1O2) Toolbox for Bio-Organic Applications: Tailoring 1O2 Generation for DNA and Protein Labelling, Targeting and Biosensing.

Authors:  Dorien Aerssens; Enrico Cadoni; Laure Tack; Annemieke Madder
Journal:  Molecules       Date:  2022-01-25       Impact factor: 4.411

Review 7.  Targeting DNA-Protein Crosslinks via Post-Translational Modifications.

Authors:  Xueyuan Leng; Julien P Duxin
Journal:  Front Mol Biosci       Date:  2022-07-04

8.  Cellular uptake of extracellular nucleosomes induces innate immune responses by binding and activating cGMP-AMP synthase (cGAS).

Authors:  Huawei Wang; Chuanlong Zang; Mengtian Ren; Mengdi Shang; Zhenghua Wang; Xuemei Peng; Qiangzhe Zhang; Xin Wen; Zhen Xi; Chuanzheng Zhou
Journal:  Sci Rep       Date:  2020-09-21       Impact factor: 4.379

  8 in total

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