Literature DB >> 30688445

Excision of Oxidatively Generated Guanine Lesions by Competing Base and Nucleotide Excision Repair Mechanisms in Human Cells.

Vladimir Shafirovich1, Konstantin Kropachev1, Marina Kolbanovskiy1, Nicholas E Geacintov1.   

Abstract

The interchange between different repair mechanisms in human cells has long been a subject of interest. Here, we provide a direct demonstration that the oxidatively generated guanine lesions spiroiminodihydantoin (Sp) and 5-guanidinohydantoin (Gh) embedded in double-stranded DNA are substrates of both base excision repair (BER) and nucleotide excision repair (NER) mechanisms in intact human cells. Site-specifically modified, 32P-internally labeled double-stranded DNA substrates were transfected into fibroblasts or HeLa cells, and the BER and/or NER mono- and dual incision products were quantitatively recovered after 2-8 h incubation periods and lysis of the cells. DNA duplexes bearing single benzo[ a]pyrene-derived guanine adduct were employed as positive controls of NER. The NER activities, but not the BER activities, were abolished in XPA-/- cells, while the BER yields were strongly reduced in NEIL1-/- cells. Co-transfecting different concentrations of analogous DNA sequences bearing the BER substrates 5-hydroxyuracil diminish the BER yields of Sp lesions and enhance the yields of NER products. These results are consistent with a model based on the local availability of BER and NER factors in human cells and their competitive binding to the same Sp or Gh BER/NER substrates.

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Year:  2019        PMID: 30688445      PMCID: PMC6465092          DOI: 10.1021/acs.chemrestox.8b00411

Source DB:  PubMed          Journal:  Chem Res Toxicol        ISSN: 0893-228X            Impact factor:   3.739


  46 in total

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Journal:  Nature       Date:  2000-02-24       Impact factor: 49.962

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Journal:  Biochemistry       Date:  2000-12-05       Impact factor: 3.162

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Journal:  Carcinogenesis       Date:  1990-09       Impact factor: 4.944

5.  Direct oxidation of guanine and 7,8-dihydro-8-oxoguanine in DNA by a high-valent chromium complex: a possible mechanism for chromate genotoxicity.

Authors:  K D Sugden; C K Campo; B D Martin
Journal:  Chem Res Toxicol       Date:  2001-09       Impact factor: 3.739

6.  Recognition of the oxidized lesions spiroiminodihydantoin and guanidinohydantoin in DNA by the mammalian base excision repair glycosylases NEIL1 and NEIL2.

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Journal:  DNA Repair (Amst)       Date:  2005-01-02

7.  Lifetimes and reaction pathways of guanine radical cations and neutral guanine radicals in an oligonucleotide in aqueous solutions.

Authors:  Yekaterina Rokhlenko; Nicholas E Geacintov; Vladimir Shafirovich
Journal:  J Am Chem Soc       Date:  2012-02-29       Impact factor: 15.419

8.  Non-specific DNA binding interferes with the efficient excision of oxidative lesions from chromatin by the human DNA glycosylase, NEIL1.

Authors:  Ian D Odell; Kheng Newick; Nicholas H Heintz; Susan S Wallace; David S Pederson
Journal:  DNA Repair (Amst)       Date:  2009-12-11

9.  Superior removal of hydantoin lesions relative to other oxidized bases by the human DNA glycosylase hNEIL1.

Authors:  Nirmala Krishnamurthy; Xiaobei Zhao; Cynthia J Burrows; Sheila S David
Journal:  Biochemistry       Date:  2008-06-11       Impact factor: 3.162

10.  Highly specific and sensitive method for measuring nucleotide excision repair kinetics of ultraviolet photoproducts in human cells.

Authors:  Jun-Hyuk Choi; Shobhan Gaddameedhi; So-Young Kim; Jinchuan Hu; Michael G Kemp; Aziz Sancar
Journal:  Nucleic Acids Res       Date:  2013-11-22       Impact factor: 16.971

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  10 in total

1.  Iron Fenton oxidation of 2'-deoxyguanosine in physiological bicarbonate buffer yields products consistent with the reactive oxygen species carbonate radical anion not the hydroxyl radical.

Authors:  Aaron M Fleming; Cynthia J Burrows
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2.  NEIL1 stimulates neurogenesis and suppresses neuroinflammation after stress.

Authors:  Beimeng Yang; David M Figueroa; Yujun Hou; Mansi Babbar; Stephanie L Baringer; Deborah L Croteau; Vilhelm A Bohr
Journal:  Free Radic Biol Med       Date:  2019-06-05       Impact factor: 7.376

3.  5-Formylcytosine-induced DNA-peptide cross-links reduce transcription efficiency, but do not cause transcription errors in human cells.

Authors:  Shaofei Ji; Daeyoon Park; Konstantin Kropachev; Marina Kolbanovskiy; Iwen Fu; Suse Broyde; Maram Essawy; Nicholas E Geacintov; Natalia Y Tretyakova
Journal:  J Biol Chem       Date:  2019-10-09       Impact factor: 5.157

4.  Inhibition of Excision of Oxidatively Generated Hydantoin DNA Lesions by NEIL1 by the Competitive Binding of the Nucleotide Excision Repair Factor XPC-RAD23B.

Authors:  Marina Kolbanovskiy; Yoonjung Shim; Jung-Hyun Min; Nicholas E Geacintov; Vladimir Shafirovich
Journal:  Biochemistry       Date:  2020-04-21       Impact factor: 3.162

5.  Base and Nucleotide Excision Repair Pathways in DNA Plasmids Harboring Oxidatively Generated Guanine Lesions.

Authors:  Marina Kolbanovskiy; Abraham Aharonoff; Ana Helena Sales; Nicholas E Geacintov; Vladimir Shafirovich
Journal:  Chem Res Toxicol       Date:  2021-01-06       Impact factor: 3.739

Review 6.  5',8-Cyclopurine Lesions in DNA Damage: Chemical, Analytical, Biological, and Diagnostic Significance.

Authors:  Chryssostomos Chatgilialoglu; Carla Ferreri; Nicholas E Geacintov; Marios G Krokidis; Yuan Liu; Annalisa Masi; Vladimir Shafirovich; Michael A Terzidis; Pawlos S Tsegay
Journal:  Cells       Date:  2019-05-28       Impact factor: 6.600

Review 7.  DNA Oxidation and Excision Repair Pathways.

Authors:  Tae-Hee Lee; Tae-Hong Kang
Journal:  Int J Mol Sci       Date:  2019-12-03       Impact factor: 5.923

Review 8.  Excision of Oxidatively Generated Guanine Lesions by Competitive DNA Repair Pathways.

Authors:  Vladimir Shafirovich; Nicholas E Geacintov
Journal:  Int J Mol Sci       Date:  2021-03-07       Impact factor: 5.923

9.  Cooperation and interplay between base and nucleotide excision repair pathways: From DNA lesions to proteins.

Authors:  Namrata Kumar; Natália C Moreno; Bruno C Feltes; Carlos Fm Menck; Bennett Van Houten
Journal:  Genet Mol Biol       Date:  2020-03-02       Impact factor: 1.771

10.  The involvement of nucleotide excision repair proteins in the removal of oxidative DNA damage.

Authors:  Namrata Kumar; Sripriya Raja; Bennett Van Houten
Journal:  Nucleic Acids Res       Date:  2020-11-18       Impact factor: 16.971

  10 in total

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